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ERG28 (ergosterol biosynthesis 28 homolog)

Identity

Other aliasC14orf1
NET51
HGNC (Hugo) ERG28
LocusID (NCBI) 11161
Atlas_Id 56944
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 75650890 and ends at 75661195 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ERG28   1187
Cards
Entrez_Gene (NCBI)ERG28  11161  ergosterol biosynthesis 28 homolog
AliasesC14orf1; NET51
GeneCards (Weizmann)ERG28
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:75650890-75661195 [Contig_View]  ERG28 [Vega]
TCGA cBioPortalERG28
AceView (NCBI)ERG28
Genatlas (Paris)ERG28
WikiGenes11161
SOURCE (Princeton)ERG28
Genetics Home Reference (NIH)ERG28
Genomic and cartography
GoldenPath hg38 (UCSC)ERG28  -     chr14:75650890-75661195 -  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERG28  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblERG28 - 14q24.3 [CytoView hg19]  ERG28 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIERG28 [Mapview hg19]  ERG28 [Mapview hg38]
OMIM604576   
Gene and transcription
Genbank (Entrez)AA709128 AF134159 AF136971 AF161406 AK311764
RefSeq transcript (Entrez)NM_007176
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERG28
Cluster EST : UnigeneHs.15106 [ NCBI ]
CGAP (NCI)Hs.15106
Gene ExpressionERG28 [ NCBI-GEO ]   ERG28 [ EBI - ARRAY_EXPRESS ]   ERG28 [ SEEK ]   ERG28 [ MEM ]
Gene Expression Viewer (FireBrowse)ERG28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11161
GTEX Portal (Tissue expression)ERG28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKR5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKR5
Splice isoforms : SwissVarQ9UKR5
PhosPhoSitePlusQ9UKR5
Domains : Interpro (EBI)Erg28   
Domain families : Pfam (Sanger)Erg28 (PF03694)   
Domain families : Pfam (NCBI)pfam03694   
Conserved Domain (NCBI)ERG28
DMDM Disease mutations11161
Blocks (Seattle)ERG28
SuperfamilyQ9UKR5
Peptide AtlasQ9UKR5
IPIIPI00007730   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKR5
IntAct (EBI)Q9UKR5
BioGRIDERG28
STRING (EMBL)ERG28
ZODIACERG28
Ontologies - Pathways
QuickGOQ9UKR5
Ontology : AmiGOmolecular_function  endoplasmic reticulum membrane  ergosterol biosynthetic process  biological_process  integral component of membrane  transport vesicle  protein binding, bridging  
Ontology : EGO-EBImolecular_function  endoplasmic reticulum membrane  ergosterol biosynthetic process  biological_process  integral component of membrane  transport vesicle  protein binding, bridging  
NDEx NetworkERG28
Atlas of Cancer Signalling NetworkERG28
Wikipedia pathwaysERG28
Orthology - Evolution
OrthoDB11161
Phylogenetic Trees/Animal Genes : TreeFamERG28
HOVERGENQ9UKR5
HOGENOMQ9UKR5
Homologs : HomoloGeneERG28
Homology/Alignments : Family Browser (UCSC)ERG28
Gene fusions - Rearrangements
Tumor Fusion PortalERG28
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERG28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERG28
dbVarERG28
ClinVarERG28
1000_GenomesERG28 
Exome Variant ServerERG28
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP11161
Genomic Variants (DGV)ERG28 [DGVbeta]
DECIPHERERG28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERG28 
Mutations
ICGC Data PortalERG28 
TCGA Data PortalERG28 
Broad Tumor PortalERG28
OASIS PortalERG28 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERG28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERG28
DgiDB (Drug Gene Interaction Database)ERG28
DoCM (Curated mutations)ERG28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERG28 (select a term)
intoGenERG28
Cancer3DERG28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604576   
Orphanet
DisGeNETERG28
MedgenERG28
Genetic Testing Registry ERG28
NextProtQ9UKR5 [Medical]
TSGene11161
GENETestsERG28
Target ValidationERG28
Huge Navigator ERG28 [HugePedia]
snp3D : Map Gene to Disease11161
BioCentury BCIQERG28
ClinGenERG28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11161
Chemical/Pharm GKB GenePA25513
Clinical trialERG28
Miscellaneous
canSAR (ICR)ERG28 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERG28
EVEXERG28
GoPubMedERG28
iHOPERG28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:12:15 CET 2017

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