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ERI2 (ERI1 exoribonuclease family member 2)

Identity

Alias_namesEXOD1
exonuclease domain containing 1
Alias_symbol (synonym)KIAA1504
MGC16943
ZGRF5
Other alias
HGNC (Hugo) ERI2
LocusID (NCBI) 112479
Atlas_Id 62881
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 20796341 and ends at 20806473 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GPBP1 (5q11.2) / ERI2 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ERI2   30541
Cards
Entrez_Gene (NCBI)ERI2  112479  ERI1 exoribonuclease family member 2
AliasesEXOD1; ZGRF5
GeneCards (Weizmann)ERI2
Ensembl hg19 (Hinxton)ENSG00000196678 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196678 [Gene_View]  chr16:20796341-20806473 [Contig_View]  ERI2 [Vega]
ICGC DataPortalENSG00000196678
TCGA cBioPortalERI2
AceView (NCBI)ERI2
Genatlas (Paris)ERI2
WikiGenes112479
SOURCE (Princeton)ERI2
Genetics Home Reference (NIH)ERI2
Genomic and cartography
GoldenPath hg38 (UCSC)ERI2  -     chr16:20796341-20806473 -  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERI2  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblERI2 - 16p12.3 [CytoView hg19]  ERI2 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIERI2 [Mapview hg19]  ERI2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040937 AK127391 AK292594 AK304347 BC010503
RefSeq transcript (Entrez)NM_001142725 NM_080663
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERI2
Cluster EST : UnigeneHs.248437 [ NCBI ]
CGAP (NCI)Hs.248437
Alternative Splicing GalleryENSG00000196678
Gene ExpressionERI2 [ NCBI-GEO ]   ERI2 [ EBI - ARRAY_EXPRESS ]   ERI2 [ SEEK ]   ERI2 [ MEM ]
Gene Expression Viewer (FireBrowse)ERI2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112479
GTEX Portal (Tissue expression)ERI2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8K979   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8K979  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8K979
Splice isoforms : SwissVarA8K979
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
PhosPhoSitePlusA8K979
Domains : Interpro (EBI)Exonuclease_RNaseT/DNA_pol3    RNaseH-like_dom    Znf_GRF   
Domain families : Pfam (Sanger)RNase_T (PF00929)    zf-GRF (PF06839)   
Domain families : Pfam (NCBI)pfam00929    pfam06839   
Domain families : Smart (EMBL)EXOIII (SM00479)  
Conserved Domain (NCBI)ERI2
DMDM Disease mutations112479
Blocks (Seattle)ERI2
SuperfamilyA8K979
Human Protein AtlasENSG00000196678
Peptide AtlasA8K979
HPRD14456
IPIIPI00872685   IPI00027086   IPI00444503   IPI00555642   
Protein Interaction databases
DIP (DOE-UCLA)A8K979
IntAct (EBI)A8K979
FunCoupENSG00000196678
BioGRIDERI2
STRING (EMBL)ERI2
ZODIACERI2
Ontologies - Pathways
QuickGOA8K979
Ontology : AmiGOexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  nucleic acid binding  exonuclease activity  zinc ion binding  
Ontology : EGO-EBIexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  nucleic acid binding  exonuclease activity  zinc ion binding  
NDEx NetworkERI2
Atlas of Cancer Signalling NetworkERI2
Wikipedia pathwaysERI2
Orthology - Evolution
OrthoDB112479
GeneTree (enSembl)ENSG00000196678
Phylogenetic Trees/Animal Genes : TreeFamERI2
HOVERGENA8K979
HOGENOMA8K979
Homologs : HomoloGeneERI2
Homology/Alignments : Family Browser (UCSC)ERI2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERI2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERI2
dbVarERI2
ClinVarERI2
1000_GenomesERI2 
Exome Variant ServerERI2
ExAC (Exome Aggregation Consortium)ERI2 (select the gene name)
Genetic variants : HAPMAP112479
Genomic Variants (DGV)ERI2 [DGVbeta]
DECIPHERERI2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERI2 
Mutations
ICGC Data PortalERI2 
TCGA Data PortalERI2 
Broad Tumor PortalERI2
OASIS PortalERI2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICERI2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDERI2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERI2
DgiDB (Drug Gene Interaction Database)ERI2
DoCM (Curated mutations)ERI2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERI2 (select a term)
intoGenERI2
Cancer3DERI2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenERI2
Genetic Testing Registry ERI2
NextProtA8K979 [Medical]
TSGene112479
GENETestsERI2
Target ValidationERI2
Huge Navigator ERI2 [HugePedia]
snp3D : Map Gene to Disease112479
BioCentury BCIQERI2
ClinGenERI2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112479
Chemical/Pharm GKB GenePA164719245
Clinical trialERI2
Miscellaneous
canSAR (ICR)ERI2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERI2
EVEXERI2
GoPubMedERI2
iHOPERI2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:12 CEST 2017

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