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ERI3 (ERI1 exoribonuclease family member 3)

Identity

Alias_namesPRNPIP
prion protein interacting protein
Alias_symbol (synonym)FLJ22943
PINT1
Other alias
HGNC (Hugo) ERI3
LocusID (NCBI) 79033
Atlas_Id 62882
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 44221070 and ends at 44355279 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ERI3 (1p34.1) / YIPF3 (6p21.1)GATAD2B (1q21.3) / ERI3 (1p34.1)P3H1 (1p34.2) / ERI3 (1p34.1)
GATAD2B ERI3LEPRE1 ERI3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ERI3   17276
Cards
Entrez_Gene (NCBI)ERI3  79033  ERI1 exoribonuclease family member 3
AliasesPINT1; PRNPIP
GeneCards (Weizmann)ERI3
Ensembl hg19 (Hinxton)ENSG00000117419 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117419 [Gene_View]  chr1:44221070-44355279 [Contig_View]  ERI3 [Vega]
ICGC DataPortalENSG00000117419
TCGA cBioPortalERI3
AceView (NCBI)ERI3
Genatlas (Paris)ERI3
WikiGenes79033
SOURCE (Princeton)ERI3
Genetics Home Reference (NIH)ERI3
Genomic and cartography
GoldenPath hg38 (UCSC)ERI3  -     chr1:44221070-44355279 -  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERI3  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblERI3 - 1p34.1 [CytoView hg19]  ERI3 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIERI3 [Mapview hg19]  ERI3 [Mapview hg38]
OMIM609917   
Gene and transcription
Genbank (Entrez)AF007157 AK026596 AK290567 AK293833 AK297708
RefSeq transcript (Entrez)NM_001301698 NM_001301699 NM_001301700 NM_001301701 NM_024066
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERI3
Cluster EST : UnigeneHs.731413 [ NCBI ]
CGAP (NCI)Hs.731413
Alternative Splicing GalleryENSG00000117419
Gene ExpressionERI3 [ NCBI-GEO ]   ERI3 [ EBI - ARRAY_EXPRESS ]   ERI3 [ SEEK ]   ERI3 [ MEM ]
Gene Expression Viewer (FireBrowse)ERI3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79033
GTEX Portal (Tissue expression)ERI3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43414   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43414  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43414
Splice isoforms : SwissVarO43414
Catalytic activity : Enzyme3.1.-.- [ Enzyme-Expasy ]   3.1.-.-3.1.-.- [ IntEnz-EBI ]   3.1.-.- [ BRENDA ]   3.1.-.- [ KEGG ]   
PhosPhoSitePlusO43414
Domains : Interpro (EBI)Exonuclease_RNaseT/DNA_pol3    RNaseH-like_dom   
Domain families : Pfam (Sanger)RNase_T (PF00929)   
Domain families : Pfam (NCBI)pfam00929   
Domain families : Smart (EMBL)EXOIII (SM00479)  
Conserved Domain (NCBI)ERI3
DMDM Disease mutations79033
Blocks (Seattle)ERI3
PDB (SRS)2XRI   
PDB (PDBSum)2XRI   
PDB (IMB)2XRI   
PDB (RSDB)2XRI   
Structural Biology KnowledgeBase2XRI   
SCOP (Structural Classification of Proteins)2XRI   
CATH (Classification of proteins structures)2XRI   
SuperfamilyO43414
Human Protein AtlasENSG00000117419
Peptide AtlasO43414
HPRD15175
IPIIPI00020701   IPI00888358   IPI00644349   IPI00641679   IPI00943355   IPI01011710   
Protein Interaction databases
DIP (DOE-UCLA)O43414
IntAct (EBI)O43414
FunCoupENSG00000117419
BioGRIDERI3
STRING (EMBL)ERI3
ZODIACERI3
Ontologies - Pathways
QuickGOO43414
Ontology : AmiGOexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  exonuclease activity  metal ion binding  
Ontology : EGO-EBIexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  exonuclease activity  metal ion binding  
NDEx NetworkERI3
Atlas of Cancer Signalling NetworkERI3
Wikipedia pathwaysERI3
Orthology - Evolution
OrthoDB79033
GeneTree (enSembl)ENSG00000117419
Phylogenetic Trees/Animal Genes : TreeFamERI3
HOVERGENO43414
HOGENOMO43414
Homologs : HomoloGeneERI3
Homology/Alignments : Family Browser (UCSC)ERI3
Gene fusions - Rearrangements
Fusion: TCGAGATAD2B ERI3
Fusion: TCGALEPRE1 ERI3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERI3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERI3
dbVarERI3
ClinVarERI3
1000_GenomesERI3 
Exome Variant ServerERI3
ExAC (Exome Aggregation Consortium)ERI3 (select the gene name)
Genetic variants : HAPMAP79033
Genomic Variants (DGV)ERI3 [DGVbeta]
DECIPHERERI3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERI3 
Mutations
ICGC Data PortalERI3 
TCGA Data PortalERI3 
Broad Tumor PortalERI3
OASIS PortalERI3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICERI3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDERI3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERI3
DgiDB (Drug Gene Interaction Database)ERI3
DoCM (Curated mutations)ERI3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERI3 (select a term)
intoGenERI3
Cancer3DERI3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609917   
Orphanet
MedgenERI3
Genetic Testing Registry ERI3
NextProtO43414 [Medical]
TSGene79033
GENETestsERI3
Target ValidationERI3
Huge Navigator ERI3 [HugePedia]
snp3D : Map Gene to Disease79033
BioCentury BCIQERI3
ClinGenERI3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79033
Chemical/Pharm GKB GenePA164719272
Clinical trialERI3
Miscellaneous
canSAR (ICR)ERI3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERI3
EVEXERI3
GoPubMedERI3
iHOPERI3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:47:19 CEST 2017

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