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ERICH3 (glutamate-rich 3)

Identity

Alias_namesC1orf173
chromosome 1 open reading frame 173
glutamate-rich 3
Alias_symbol (synonym)DKFZp547I048
RP11-653A5.1
Other alias
HGNC (Hugo) ERICH3
LocusID (NCBI) 127254
Atlas_Id 62887
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 75033795 and ends at 75139422 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NEGR1 (1p31.1) / ERICH3 (1p31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ERICH3   25346
Cards
Entrez_Gene (NCBI)ERICH3  127254  glutamate-rich 3
AliasesC1orf173
GeneCards (Weizmann)ERICH3
Ensembl hg19 (Hinxton)ENSG00000178965 [Gene_View]  chr1:75033795-75139422 [Contig_View]  ERICH3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178965 [Gene_View]  chr1:75033795-75139422 [Contig_View]  ERICH3 [Vega]
ICGC DataPortalENSG00000178965
TCGA cBioPortalERICH3
AceView (NCBI)ERICH3
Genatlas (Paris)ERICH3
WikiGenes127254
SOURCE (Princeton)ERICH3
Genetics Home Reference (NIH)ERICH3
Genomic and cartography
GoldenPath hg19 (UCSC)ERICH3  -     chr1:75033795-75139422 -  1p31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ERICH3  -     1p31.1   [Description]    (hg38-Dec_2013)
EnsemblERICH3 - 1p31.1 [CytoView hg19]  ERICH3 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIERICH3 [Mapview hg19]  ERICH3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI028350 AK127470 AL833250 AL834414 BC035114
RefSeq transcript (Entrez)NM_001002912
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)ERICH3
Cluster EST : UnigeneHs.531182 [ NCBI ]
CGAP (NCI)Hs.531182
Alternative Splicing GalleryENSG00000178965
Gene ExpressionERICH3 [ NCBI-GEO ]   ERICH3 [ EBI - ARRAY_EXPRESS ]   ERICH3 [ SEEK ]   ERICH3 [ MEM ]
Gene Expression Viewer (FireBrowse)ERICH3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127254
GTEX Portal (Tissue expression)ERICH3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5RHP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5RHP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5RHP9
Splice isoforms : SwissVarQ5RHP9
PhosPhoSitePlusQ5RHP9
Domains : Interpro (EBI)DUF4590   
Domain families : Pfam (Sanger)DUF4590 (PF15257)   
Domain families : Pfam (NCBI)pfam15257   
Conserved Domain (NCBI)ERICH3
DMDM Disease mutations127254
Blocks (Seattle)ERICH3
SuperfamilyQ5RHP9
Human Protein AtlasENSG00000178965
Peptide AtlasQ5RHP9
HPRD16816
IPIIPI00470515   IPI00867618   IPI00453467   
Protein Interaction databases
DIP (DOE-UCLA)Q5RHP9
IntAct (EBI)Q5RHP9
FunCoupENSG00000178965
BioGRIDERICH3
STRING (EMBL)ERICH3
ZODIACERICH3
Ontologies - Pathways
QuickGOQ5RHP9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkERICH3
Atlas of Cancer Signalling NetworkERICH3
Wikipedia pathwaysERICH3
Orthology - Evolution
OrthoDB127254
GeneTree (enSembl)ENSG00000178965
Phylogenetic Trees/Animal Genes : TreeFamERICH3
HOVERGENQ5RHP9
HOGENOMQ5RHP9
Homologs : HomoloGeneERICH3
Homology/Alignments : Family Browser (UCSC)ERICH3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERICH3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERICH3
dbVarERICH3
ClinVarERICH3
1000_GenomesERICH3 
Exome Variant ServerERICH3
ExAC (Exome Aggregation Consortium)ERICH3 (select the gene name)
Genetic variants : HAPMAP127254
Genomic Variants (DGV)ERICH3 [DGVbeta]
DECIPHER (Syndromes)1:75033795-75139422  ENSG00000178965
CONAN: Copy Number AnalysisERICH3 
Mutations
ICGC Data PortalERICH3 
TCGA Data PortalERICH3 
Broad Tumor PortalERICH3
OASIS PortalERICH3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERICH3
BioMutasearch ERICH3
DgiDB (Drug Gene Interaction Database)ERICH3
DoCM (Curated mutations)ERICH3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERICH3 (select a term)
intoGenERICH3
Cancer3DERICH3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenERICH3
Genetic Testing Registry ERICH3
NextProtQ5RHP9 [Medical]
TSGene127254
GENETestsERICH3
Huge Navigator ERICH3 [HugePedia]
snp3D : Map Gene to Disease127254
BioCentury BCIQERICH3
ClinGenERICH3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127254
Chemical/Pharm GKB GenePA142672422
Clinical trialERICH3
Miscellaneous
canSAR (ICR)ERICH3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERICH3
EVEXERICH3
GoPubMedERICH3
iHOPERICH3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:03 CET 2017

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