Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ERLNC1 (estrogen receptor responsive lncRNA 1)

Identity

Alias_symbol (synonym)TC0101441
ElncRNA1
Other alias
HGNC (Hugo) ERLNC1
LocusID (NCBI) 101929441
Atlas_Id 79820
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 204141408 and ends at 204143009 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ERLNC1   41109
Cards
Entrez_Gene (NCBI)ERLNC1  101929441  estrogen receptor responsive lncRNA 1
AliasesElncRNA1; TC0101441
GeneCards (Weizmann)ERLNC1
Ensembl hg19 (Hinxton)ENSG00000230550 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230550 [Gene_View]  chr1:204141408-204143009 [Contig_View]  ERLNC1 [Vega]
ICGC DataPortalENSG00000230550
TCGA cBioPortalERLNC1
AceView (NCBI)ERLNC1
Genatlas (Paris)ERLNC1
WikiGenes101929441
SOURCE (Princeton)ERLNC1
Genetics Home Reference (NIH)ERLNC1
Genomic and cartography
GoldenPath hg38 (UCSC)ERLNC1  -     chr1:204141408-204143009 +  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERLNC1  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblERLNC1 - 1q32.1 [CytoView hg19]  ERLNC1 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIERLNC1 [Mapview hg19]  ERLNC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038769
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERLNC1
Cluster EST : UnigeneHs.736889 [ NCBI ]
CGAP (NCI)Hs.736889
Alternative Splicing GalleryENSG00000230550
Gene ExpressionERLNC1 [ NCBI-GEO ]   ERLNC1 [ EBI - ARRAY_EXPRESS ]   ERLNC1 [ SEEK ]   ERLNC1 [ MEM ]
Gene Expression Viewer (FireBrowse)ERLNC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101929441
GTEX Portal (Tissue expression)ERLNC1
Human Protein AtlasENSG00000230550-ERLNC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ERLNC1
DMDM Disease mutations101929441
Blocks (Seattle)ERLNC1
Human Protein Atlas [tissue]ENSG00000230550-ERLNC1 [tissue]
Protein Interaction databases
FunCoupENSG00000230550
BioGRIDERLNC1
STRING (EMBL)ERLNC1
ZODIACERLNC1
Ontologies - Pathways
Huge Navigator ERLNC1 [HugePedia]
snp3D : Map Gene to Disease101929441
BioCentury BCIQERLNC1
ClinGenERLNC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101929441
Clinical trialERLNC1
Miscellaneous
canSAR (ICR)ERLNC1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERLNC1
EVEXERLNC1
GoPubMedERLNC1
iHOPERLNC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:00:00 CET 2017

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