Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ERMAP (erythroblast membrane-associated protein (Scianna blood group))

Identity

Other namesBTN5
PRO2801
RD
SC
HGNC (Hugo) ERMAP
LocusID (NCBI) 114625
Location 1p34.2
Location_base_pair Starts at 43282776 and ends at 43310660 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ERMAP   15743
Cards
Entrez_Gene (NCBI)ERMAP  114625  erythroblast membrane-associated protein (Scianna blood group)
GeneCards (Weizmann)ERMAP
Ensembl (Hinxton)ENSG00000164010 [Gene_View]  chr1:43282776-43310660 [Contig_View]  ERMAP [Vega]
ICGC DataPortalENSG00000164010
cBioPortalERMAP
AceView (NCBI)ERMAP
Genatlas (Paris)ERMAP
WikiGenes114625
SOURCE (Princeton)NM_001017922 NM_018538
Genomic and cartography
GoldenPath (UCSC)ERMAP  -  1p34.2   chr1:43282776-43310660 +  1p34.2   [Description]    (hg19-Feb_2009)
EnsemblERMAP - 1p34.2 [CytoView]
Mapping of homologs : NCBIERMAP [Mapview]
OMIM111620   111750   609017   
Gene and transcription
Genbank (Entrez)AF119899 AF311284 AF311285 AK056138 AK125447
RefSeq transcript (Entrez)NM_001017922 NM_018538
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_008749 NT_032977 NW_001838578 NW_004929290
Consensus coding sequences : CCDS (NCBI)ERMAP
Cluster EST : UnigeneHs.439437 [ NCBI ]
CGAP (NCI)Hs.439437
Alternative Splicing : Fast-db (Paris)GSHG0000435
Alternative Splicing GalleryENSG00000164010
Gene ExpressionERMAP [ NCBI-GEO ]     ERMAP [ SEEK ]   ERMAP [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PL5 (Uniprot)
NextProtQ96PL5  [Medical]
With graphics : InterProQ96PL5
Splice isoforms : SwissVarQ96PL5 (Swissvar)
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)B30.2/SPRY [organisation]   Butyrophylin [organisation]   ConA-like_lec_gl_sf [organisation]   Ig-like_dom [organisation]   Ig-like_fold [organisation]   Ig_sub [organisation]   Ig_V-set [organisation]   PRY [organisation]   SPla/RYanodine_receptor_subgr [organisation]   SPRY_rcpt [organisation]  
Related proteins : CluSTrQ96PL5
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  PRY (SM00589)  SPRY (SM00449)  
DMDM Disease mutations114625
Blocks (Seattle)Q96PL5
Human Protein AtlasENSG00000164010 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ96PL5
HPRD12355
IPIIPI00044556   IPI00032004   IPI00647116   
Protein Interaction databases
DIP (DOE-UCLA)Q96PL5
IntAct (EBI)Q96PL5
FunCoupENSG00000164010
BioGRIDERMAP
InParanoidQ96PL5
Interologous Interaction database Q96PL5
IntegromeDBERMAP
STRING (EMBL)ERMAP
Ontologies - Pathways
Ontology : AmiGOplasma membrane  integral component of membrane  cytoplasmic vesicle  
Ontology : EGO-EBIplasma membrane  integral component of membrane  cytoplasmic vesicle  
Protein Interaction DatabaseERMAP
Wikipedia pathwaysERMAP
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ERMAP
snp3D : Map Gene to Disease114625
SNP (GeneSNP Utah)ERMAP
SNP : HGBaseERMAP
Genetic variants : HAPMAPERMAP
Exome VariantERMAP
1000_GenomesERMAP 
ICGC programENSG00000164010 
Somatic Mutations in Cancer : COSMICERMAP 
CONAN: Copy Number AnalysisERMAP 
Mutations and Diseases : HGMDERMAP
Mutations and Diseases : intOGenERMAP
Genomic VariantsERMAP  ERMAP [DGVbeta]
dbVarERMAP
ClinVarERMAP
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM111620    111750    609017   
MedgenERMAP
GENETestsERMAP
Disease Genetic AssociationERMAP
Huge Navigator ERMAP [HugePedia]  ERMAP [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneERMAP
Homology/Alignments : Family Browser (UCSC)ERMAP
Phylogenetic Trees/Animal Genes : TreeFamERMAP
Chemical/Protein Interactions : CTD114625
Chemical/Pharm GKB GenePA27860
Clinical trialERMAP
Cancer Resource (Charite)ENSG00000164010
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
CoreMineERMAP
iHOPERMAP
OncoSearchERMAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:46:00 CEST 2014

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