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ERMAP (erythroblast membrane associated protein (Scianna blood group))

Identity

Other namesBTN5
PRO2801
RD
SC
HGNC (Hugo) ERMAP
LocusID (NCBI) 114625
Atlas_Id 40487
Location 1p34.2
Location_base_pair Starts at 43282776 and ends at 43310660 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SLC2A4 (17p13.1) / ERMAP (1p34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ERMAP   15743
Cards
Entrez_Gene (NCBI)ERMAP  114625  erythroblast membrane associated protein (Scianna blood group)
AliasesBTN5; PRO2801; RD; SC
GeneCards (Weizmann)ERMAP
Ensembl hg19 (Hinxton)ENSG00000164010 [Gene_View]  chr1:43282776-43310660 [Contig_View]  ERMAP [Vega]
Ensembl hg38 (Hinxton)ENSG00000164010 [Gene_View]  chr1:43282776-43310660 [Contig_View]  ERMAP [Vega]
ICGC DataPortalENSG00000164010
TCGA cBioPortalERMAP
AceView (NCBI)ERMAP
Genatlas (Paris)ERMAP
WikiGenes114625
SOURCE (Princeton)ERMAP
Genomic and cartography
GoldenPath hg19 (UCSC)ERMAP  -     chr1:43282776-43310660 +  1p34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ERMAP  -     1p34.2   [Description]    (hg38-Dec_2013)
EnsemblERMAP - 1p34.2 [CytoView hg19]  ERMAP - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIERMAP [Mapview hg19]  ERMAP [Mapview hg38]
OMIM111620   111750   609017   
Gene and transcription
Genbank (Entrez)AF119899 AF311284 AF311285 AK056138 AK125447
RefSeq transcript (Entrez)NM_001017922 NM_018538
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_008749 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)ERMAP
Cluster EST : UnigeneHs.439437 [ NCBI ]
CGAP (NCI)Hs.439437
Alternative Splicing GalleryENSG00000164010
Gene ExpressionERMAP [ NCBI-GEO ]   ERMAP [ EBI - ARRAY_EXPRESS ]   ERMAP [ SEEK ]   ERMAP [ MEM ]
Gene Expression Viewer (FireBrowse)ERMAP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114625
GTEX Portal (Tissue expression)ERMAP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PL5 (Uniprot)
NextProtQ96PL5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PL5
Splice isoforms : SwissVarQ96PL5 (Swissvar)
PhosPhoSitePlusQ96PL5
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set    PRY    SPRY_dom   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  PRY (SM00589)  SPRY (SM00449)  
DMDM Disease mutations114625
Blocks (Seattle)ERMAP
SuperfamilyQ96PL5
Human Protein AtlasENSG00000164010
Peptide AtlasQ96PL5
HPRD12355
IPIIPI00044556   IPI00032004   IPI00647116   
Protein Interaction databases
DIP (DOE-UCLA)Q96PL5
IntAct (EBI)Q96PL5
FunCoupENSG00000164010
BioGRIDERMAP
STRING (EMBL)ERMAP
ZODIACERMAP
Ontologies - Pathways
QuickGOQ96PL5
Ontology : AmiGOcytoplasm  plasma membrane  integral component of membrane  
Ontology : EGO-EBIcytoplasm  plasma membrane  integral component of membrane  
NDEx Network
Atlas of Cancer Signalling NetworkERMAP
Wikipedia pathwaysERMAP
Orthology - Evolution
OrthoDB114625
GeneTree (enSembl)ENSG00000164010
Phylogenetic Trees/Animal Genes : TreeFamERMAP
Homologs : HomoloGeneERMAP
Homology/Alignments : Family Browser (UCSC)ERMAP
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerERMAP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERMAP
dbVarERMAP
ClinVarERMAP
1000_GenomesERMAP 
Exome Variant ServerERMAP
ExAC (Exome Aggregation Consortium)ERMAP (select the gene name)
Genetic variants : HAPMAP114625
Genomic Variants (DGV)ERMAP [DGVbeta]
Mutations
ICGC Data PortalERMAP 
TCGA Data PortalERMAP 
Broad Tumor PortalERMAP
OASIS PortalERMAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICERMAP 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERMAP
DgiDB (Drug Gene Interaction Database)ERMAP
DoCM (Curated mutations)ERMAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERMAP (select a term)
intoGenERMAP
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:43282776-43310660  ENSG00000164010
CONAN: Copy Number AnalysisERMAP 
Mutations and Diseases : HGMDERMAP
OMIM111620    111750    609017   
MedgenERMAP
Genetic Testing Registry ERMAP
NextProtQ96PL5 [Medical]
TSGene114625
GENETestsERMAP
Huge Navigator ERMAP [HugePedia]
snp3D : Map Gene to Disease114625
BioCentury BCIQERMAP
ClinGenERMAP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114625
Chemical/Pharm GKB GenePA27860
Clinical trialERMAP
Miscellaneous
canSAR (ICR)ERMAP (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERMAP
EVEXERMAP
GoPubMedERMAP
iHOPERMAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:01:50 CEST 2016

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