Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ERMARD (ER membrane associated RNA degradation)

Identity

Alias_namesC6orf70
chromosome 6 open reading frame 70
Alias_symbol (synonym)FLJ11152
dJ266L20.3
Other aliasPVNH6
HGNC (Hugo) ERMARD
LocusID (NCBI) 55780
Atlas_Id 62896
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 169751622 and ends at 169781584 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MARCH7 (2q24.2) / ERMARD (6q27)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ERMARD   21056
Cards
Entrez_Gene (NCBI)ERMARD  55780  ER membrane associated RNA degradation
AliasesC6orf70; PVNH6; dJ266L20.3
GeneCards (Weizmann)ERMARD
Ensembl hg19 (Hinxton)ENSG00000130023 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130023 [Gene_View]  ENSG00000130023 [Sequence]  chr6:169751622-169781584 [Contig_View]  ERMARD [Vega]
ICGC DataPortalENSG00000130023
TCGA cBioPortalERMARD
AceView (NCBI)ERMARD
Genatlas (Paris)ERMARD
WikiGenes55780
SOURCE (Princeton)ERMARD
Genetics Home Reference (NIH)ERMARD
Genomic and cartography
GoldenPath hg38 (UCSC)ERMARD  -     chr6:169751622-169781584 +  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERMARD  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblERMARD - 6q27 [CytoView hg19]  ERMARD - 6q27 [CytoView hg38]
Mapping of homologs : NCBIERMARD [Mapview hg19]  ERMARD [Mapview hg38]
OMIM615532   615544   
Gene and transcription
Genbank (Entrez)AA909435 AI522177 AK001369 AK002014 AK021520
RefSeq transcript (Entrez)NM_001278531 NM_001278532 NM_001278533 NM_018341
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_033842 NT_187552
Consensus coding sequences : CCDS (NCBI)ERMARD
Cluster EST : UnigeneHs.47546 [ NCBI ]
CGAP (NCI)Hs.47546
Alternative Splicing GalleryENSG00000130023
Gene ExpressionERMARD [ NCBI-GEO ]   ERMARD [ EBI - ARRAY_EXPRESS ]   ERMARD [ SEEK ]   ERMARD [ MEM ]
Gene Expression Viewer (FireBrowse)ERMARD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55780
GTEX Portal (Tissue expression)ERMARD
Human Protein AtlasENSG00000130023-ERMARD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T6L9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T6L9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T6L9
Splice isoforms : SwissVarQ5T6L9
PhosPhoSitePlusQ5T6L9
Domains : Interpro (EBI)DUF4209   
Domain families : Pfam (Sanger)DUF4209 (PF13910)   
Domain families : Pfam (NCBI)pfam13910   
Conserved Domain (NCBI)ERMARD
DMDM Disease mutations55780
Blocks (Seattle)ERMARD
SuperfamilyQ5T6L9
Human Protein Atlas [tissue]ENSG00000130023-ERMARD [tissue]
Peptide AtlasQ5T6L9
HPRD18697
IPIIPI00019026   IPI00854701   IPI00012934   IPI00646576   
Protein Interaction databases
DIP (DOE-UCLA)Q5T6L9
IntAct (EBI)Q5T6L9
FunCoupENSG00000130023
BioGRIDERMARD
STRING (EMBL)ERMARD
ZODIACERMARD
Ontologies - Pathways
QuickGOQ5T6L9
Ontology : AmiGOendoplasmic reticulum membrane  multicellular organism development  integral component of membrane  
Ontology : EGO-EBIendoplasmic reticulum membrane  multicellular organism development  integral component of membrane  
NDEx NetworkERMARD
Atlas of Cancer Signalling NetworkERMARD
Wikipedia pathwaysERMARD
Orthology - Evolution
OrthoDB55780
GeneTree (enSembl)ENSG00000130023
Phylogenetic Trees/Animal Genes : TreeFamERMARD
HOVERGENQ5T6L9
HOGENOMQ5T6L9
Homologs : HomoloGeneERMARD
Homology/Alignments : Family Browser (UCSC)ERMARD
Gene fusions - Rearrangements
Fusion : QuiverERMARD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERMARD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERMARD
dbVarERMARD
ClinVarERMARD
1000_GenomesERMARD 
Exome Variant ServerERMARD
ExAC (Exome Aggregation Consortium)ENSG00000130023
GNOMAD BrowserENSG00000130023
Varsome BrowserERMARD
Genetic variants : HAPMAP55780
Genomic Variants (DGV)ERMARD [DGVbeta]
DECIPHERERMARD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERMARD 
Mutations
ICGC Data PortalERMARD 
TCGA Data PortalERMARD 
Broad Tumor PortalERMARD
OASIS PortalERMARD [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERMARD
BioMutasearch ERMARD
DgiDB (Drug Gene Interaction Database)ERMARD
DoCM (Curated mutations)ERMARD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERMARD (select a term)
intoGenERMARD
Cancer3DERMARD(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615532    615544   
Orphanet11095    13909   
DisGeNETERMARD
MedgenERMARD
Genetic Testing Registry ERMARD
NextProtQ5T6L9 [Medical]
TSGene55780
GENETestsERMARD
Target ValidationERMARD
Huge Navigator ERMARD [HugePedia]
snp3D : Map Gene to Disease55780
BioCentury BCIQERMARD
ClinGenERMARD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55780
Chemical/Pharm GKB GenePA134884522
Clinical trialERMARD
Miscellaneous
canSAR (ICR)ERMARD (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERMARD
EVEXERMARD
GoPubMedERMARD
iHOPERMARD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:44:06 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.