Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ERMP1 (endoplasmic reticulum metallopeptidase 1)

Identity

Alias_namesKIAA1815
KIAA1815
Alias_symbol (synonym)FLJ23309
FXNA
Other aliasbA207C16.3
HGNC (Hugo) ERMP1
LocusID (NCBI) 79956
Atlas_Id 62898
Location 9p24.1  [Link to chromosome band 9p24]
Location_base_pair Starts at 5784572 and ends at 5833081 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ERMP1   23703
Cards
Entrez_Gene (NCBI)ERMP1  79956  endoplasmic reticulum metallopeptidase 1
AliasesFXNA; KIAA1815; bA207C16.3
GeneCards (Weizmann)ERMP1
Ensembl hg19 (Hinxton)ENSG00000099219 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099219 [Gene_View]  chr9:5784572-5833081 [Contig_View]  ERMP1 [Vega]
ICGC DataPortalENSG00000099219
TCGA cBioPortalERMP1
AceView (NCBI)ERMP1
Genatlas (Paris)ERMP1
WikiGenes79956
SOURCE (Princeton)ERMP1
Genetics Home Reference (NIH)ERMP1
Genomic and cartography
GoldenPath hg38 (UCSC)ERMP1  -     chr9:5784572-5833081 -  9p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERMP1  -     9p24.1   [Description]    (hg19-Feb_2009)
EnsemblERMP1 - 9p24.1 [CytoView hg19]  ERMP1 - 9p24.1 [CytoView hg38]
Mapping of homologs : NCBIERMP1 [Mapview hg19]  ERMP1 [Mapview hg38]
OMIM611156   
Gene and transcription
Genbank (Entrez)AB058718 AK026962 AK093217 AK127218 AK172831
RefSeq transcript (Entrez)NM_024896
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERMP1
Cluster EST : UnigeneHs.591078 [ NCBI ]
CGAP (NCI)Hs.591078
Alternative Splicing GalleryENSG00000099219
Gene ExpressionERMP1 [ NCBI-GEO ]   ERMP1 [ EBI - ARRAY_EXPRESS ]   ERMP1 [ SEEK ]   ERMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)ERMP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79956
GTEX Portal (Tissue expression)ERMP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z2K6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z2K6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z2K6
Splice isoforms : SwissVarQ7Z2K6
PhosPhoSitePlusQ7Z2K6
Domains : Interpro (EBI)Peptidase_M28   
Domain families : Pfam (Sanger)Peptidase_M28 (PF04389)   
Domain families : Pfam (NCBI)pfam04389   
Conserved Domain (NCBI)ERMP1
DMDM Disease mutations79956
Blocks (Seattle)ERMP1
SuperfamilyQ7Z2K6
Human Protein AtlasENSG00000099219
Peptide AtlasQ7Z2K6
HPRD17227
IPIIPI00257903   IPI00981108   IPI00946242   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z2K6
IntAct (EBI)Q7Z2K6
FunCoupENSG00000099219
BioGRIDERMP1
STRING (EMBL)ERMP1
ZODIACERMP1
Ontologies - Pathways
QuickGOQ7Z2K6
Ontology : AmiGOendoplasmic reticulum membrane  proteolysis  metallopeptidase activity  membrane  integral component of membrane  metal ion binding  
Ontology : EGO-EBIendoplasmic reticulum membrane  proteolysis  metallopeptidase activity  membrane  integral component of membrane  metal ion binding  
NDEx NetworkERMP1
Atlas of Cancer Signalling NetworkERMP1
Wikipedia pathwaysERMP1
Orthology - Evolution
OrthoDB79956
GeneTree (enSembl)ENSG00000099219
Phylogenetic Trees/Animal Genes : TreeFamERMP1
HOVERGENQ7Z2K6
HOGENOMQ7Z2K6
Homologs : HomoloGeneERMP1
Homology/Alignments : Family Browser (UCSC)ERMP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERMP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERMP1
dbVarERMP1
ClinVarERMP1
1000_GenomesERMP1 
Exome Variant ServerERMP1
ExAC (Exome Aggregation Consortium)ERMP1 (select the gene name)
Genetic variants : HAPMAP79956
Genomic Variants (DGV)ERMP1 [DGVbeta]
DECIPHERERMP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERMP1 
Mutations
ICGC Data PortalERMP1 
TCGA Data PortalERMP1 
Broad Tumor PortalERMP1
OASIS PortalERMP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICERMP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDERMP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERMP1
DgiDB (Drug Gene Interaction Database)ERMP1
DoCM (Curated mutations)ERMP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERMP1 (select a term)
intoGenERMP1
Cancer3DERMP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611156   
Orphanet
MedgenERMP1
Genetic Testing Registry ERMP1
NextProtQ7Z2K6 [Medical]
TSGene79956
GENETestsERMP1
Target ValidationERMP1
Huge Navigator ERMP1 [HugePedia]
snp3D : Map Gene to Disease79956
BioCentury BCIQERMP1
ClinGenERMP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79956
Chemical/Pharm GKB GenePA162385366
Clinical trialERMP1
Miscellaneous
canSAR (ICR)ERMP1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERMP1
EVEXERMP1
GoPubMedERMP1
iHOPERMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:47:22 CEST 2017

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