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ERP27 (endoplasmic reticulum protein 27)

Identity

Alias_namesC12orf46
chromosome 12 open reading frame 46
endoplasmic reticulum protein 27 kDa
Alias_symbol (synonym)FLJ32115
ERp27
PDIA8
Other alias
HGNC (Hugo) ERP27
LocusID (NCBI) 121506
Atlas_Id 62900
Location 12p12.3  [Link to chromosome band 12p12]
Location_base_pair Starts at 14914027 and ends at 14929125 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ERP27 (12p12.3) / SPTA1 (1q23.1)GNE (9p13.3) / ERP27 (12p12.3)SFTPB (2p11.2) / ERP27 (12p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ERP27   26495
Cards
Entrez_Gene (NCBI)ERP27  121506  endoplasmic reticulum protein 27
AliasesC12orf46; PDIA8
GeneCards (Weizmann)ERP27
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:14914027-14929125 [Contig_View]  ERP27 [Vega]
TCGA cBioPortalERP27
AceView (NCBI)ERP27
Genatlas (Paris)ERP27
WikiGenes121506
SOURCE (Princeton)ERP27
Genetics Home Reference (NIH)ERP27
Genomic and cartography
GoldenPath hg38 (UCSC)ERP27  -     chr12:14914027-14929125 -  12p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERP27  -     12p12.3   [Description]    (hg19-Feb_2009)
EnsemblERP27 - 12p12.3 [CytoView hg19]  ERP27 - 12p12.3 [CytoView hg38]
Mapping of homologs : NCBIERP27 [Mapview hg19]  ERP27 [Mapview hg38]
OMIM610642   
Gene and transcription
Genbank (Entrez)AA772096 AK056677 AY358536 BC030218 BE501761
RefSeq transcript (Entrez)NM_001300784 NM_152321
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERP27
Cluster EST : UnigeneHs.162143 [ NCBI ]
CGAP (NCI)Hs.162143
Gene ExpressionERP27 [ NCBI-GEO ]   ERP27 [ EBI - ARRAY_EXPRESS ]   ERP27 [ SEEK ]   ERP27 [ MEM ]
Gene Expression Viewer (FireBrowse)ERP27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121506
GTEX Portal (Tissue expression)ERP27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DN0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DN0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DN0
Splice isoforms : SwissVarQ96DN0
PhosPhoSitePlusQ96DN0
Domains : Interpro (EBI)Thioredoxin-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ERP27
DMDM Disease mutations121506
Blocks (Seattle)ERP27
PDB (SRS)2L4C    4F9Z   
PDB (PDBSum)2L4C    4F9Z   
PDB (IMB)2L4C    4F9Z   
PDB (RSDB)2L4C    4F9Z   
Structural Biology KnowledgeBase2L4C    4F9Z   
SCOP (Structural Classification of Proteins)2L4C    4F9Z   
CATH (Classification of proteins structures)2L4C    4F9Z   
SuperfamilyQ96DN0
Peptide AtlasQ96DN0
HPRD08723
IPIIPI00061005   IPI01016048   
Protein Interaction databases
DIP (DOE-UCLA)Q96DN0
IntAct (EBI)Q96DN0
BioGRIDERP27
STRING (EMBL)ERP27
ZODIACERP27
Ontologies - Pathways
QuickGOQ96DN0
Ontology : AmiGOprotein binding  endoplasmic reticulum lumen  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum lumen  
NDEx NetworkERP27
Atlas of Cancer Signalling NetworkERP27
Wikipedia pathwaysERP27
Orthology - Evolution
OrthoDB121506
Phylogenetic Trees/Animal Genes : TreeFamERP27
HOVERGENQ96DN0
HOGENOMQ96DN0
Homologs : HomoloGeneERP27
Homology/Alignments : Family Browser (UCSC)ERP27
Gene fusions - Rearrangements
Fusion: Tumor Portal ERP27
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERP27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERP27
dbVarERP27
ClinVarERP27
1000_GenomesERP27 
Exome Variant ServerERP27
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP121506
Genomic Variants (DGV)ERP27 [DGVbeta]
DECIPHERERP27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERP27 
Mutations
ICGC Data PortalERP27 
TCGA Data PortalERP27 
Broad Tumor PortalERP27
OASIS PortalERP27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICERP27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDERP27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERP27
DgiDB (Drug Gene Interaction Database)ERP27
DoCM (Curated mutations)ERP27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERP27 (select a term)
intoGenERP27
Cancer3DERP27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610642   
Orphanet
MedgenERP27
Genetic Testing Registry ERP27
NextProtQ96DN0 [Medical]
TSGene121506
GENETestsERP27
Target ValidationERP27
Huge Navigator ERP27 [HugePedia]
snp3D : Map Gene to Disease121506
BioCentury BCIQERP27
ClinGenERP27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121506
Chemical/Pharm GKB GenePA162385401
Clinical trialERP27
Miscellaneous
canSAR (ICR)ERP27 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERP27
EVEXERP27
GoPubMedERP27
iHOPERP27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:45:59 CET 2017

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