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ERV3-1 (endogenous retrovirus group 3 member 1)

Identity

Alias_namesERV3
endogenous retroviral sequence 3 (includes zinc finger protein H-plk/HPF9)
endogenous retroviral sequence 3
endogenous retrovirus group 3, member 1
Alias_symbol (synonym)H-PLK
HERV-R
ERV-R
envR
Other aliasERVR
HERVR
HGNC (Hugo) ERV3-1
LocusID (NCBI) 2086
Atlas_Id 40489
Location 7q11.21  [Link to chromosome band 7q11]
Location_base_pair Starts at 64450733 and ends at 64467124 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ERV3-1   3454
Cards
Entrez_Gene (NCBI)ERV3-1  2086  endogenous retrovirus group 3 member 1
AliasesERV-R; ERV3; ERVR; HERV-R; 
HERVR; envR
GeneCards (Weizmann)ERV3-1
Ensembl hg19 (Hinxton)ENSG00000213462 [Gene_View]  chr7:64450733-64467124 [Contig_View]  ERV3-1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213462 [Gene_View]  chr7:64450733-64467124 [Contig_View]  ERV3-1 [Vega]
ICGC DataPortalENSG00000213462
TCGA cBioPortalERV3-1
AceView (NCBI)ERV3-1
Genatlas (Paris)ERV3-1
WikiGenes2086
SOURCE (Princeton)ERV3-1
Genetics Home Reference (NIH)ERV3-1
Genomic and cartography
GoldenPath hg19 (UCSC)ERV3-1  -     chr7:64450733-64467124 -  7q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ERV3-1  -     7q11.21   [Description]    (hg38-Dec_2013)
EnsemblERV3-1 - 7q11.21 [CytoView hg19]  ERV3-1 - 7q11.21 [CytoView hg38]
Mapping of homologs : NCBIERV3-1 [Mapview hg19]  ERV3-1 [Mapview hg38]
OMIM131170   
Gene and transcription
Genbank (Entrez)AK074464 AK097499 AK295189 BC063605 DA198800
RefSeq transcript (Entrez)NM_001007253
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)ERV3-1
Cluster EST : UnigeneHs.596334 [ NCBI ]
CGAP (NCI)Hs.596334
Alternative Splicing GalleryENSG00000213462
Gene ExpressionERV3-1 [ NCBI-GEO ]   ERV3-1 [ EBI - ARRAY_EXPRESS ]   ERV3-1 [ SEEK ]   ERV3-1 [ MEM ]
Gene Expression Viewer (FireBrowse)ERV3-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2086
GTEX Portal (Tissue expression)ERV3-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14264   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14264  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14264
Splice isoforms : SwissVarQ14264
PhosPhoSitePlusQ14264
Domains : Interpro (EBI)TLV/ENV_coat_polyprotein   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ERV3-1
DMDM Disease mutations2086
Blocks (Seattle)ERV3-1
SuperfamilyQ14264
Human Protein AtlasENSG00000213462
Peptide AtlasQ14264
HPRD15919
IPIIPI00328731   
Protein Interaction databases
DIP (DOE-UCLA)Q14264
IntAct (EBI)Q14264
FunCoupENSG00000213462
BioGRIDERV3-1
STRING (EMBL)ERV3-1
ZODIACERV3-1
Ontologies - Pathways
QuickGOQ14264
Ontology : AmiGOmolecular_function  biological_process  viral envelope  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  viral envelope  extracellular exosome  
NDEx NetworkERV3-1
Atlas of Cancer Signalling NetworkERV3-1
Wikipedia pathwaysERV3-1
Orthology - Evolution
OrthoDB2086
GeneTree (enSembl)ENSG00000213462
Phylogenetic Trees/Animal Genes : TreeFamERV3-1
HOVERGENQ14264
HOGENOMQ14264
Homologs : HomoloGeneERV3-1
Homology/Alignments : Family Browser (UCSC)ERV3-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERV3-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERV3-1
dbVarERV3-1
ClinVarERV3-1
1000_GenomesERV3-1 
Exome Variant ServerERV3-1
ExAC (Exome Aggregation Consortium)ERV3-1 (select the gene name)
Genetic variants : HAPMAP2086
Genomic Variants (DGV)ERV3-1 [DGVbeta]
DECIPHER (Syndromes)7:64450733-64467124  ENSG00000213462
CONAN: Copy Number AnalysisERV3-1 
Mutations
ICGC Data PortalERV3-1 
TCGA Data PortalERV3-1 
Broad Tumor PortalERV3-1
OASIS PortalERV3-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICERV3-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDERV3-1
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch ERV3-1
DgiDB (Drug Gene Interaction Database)ERV3-1
DoCM (Curated mutations)ERV3-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERV3-1 (select a term)
intoGenERV3-1
Cancer3DERV3-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM131170   
Orphanet
MedgenERV3-1
Genetic Testing Registry ERV3-1
NextProtQ14264 [Medical]
TSGene2086
GENETestsERV3-1
Huge Navigator ERV3-1 [HugePedia]
snp3D : Map Gene to Disease2086
BioCentury BCIQERV3-1
ClinGenERV3-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2086
Chemical/Pharm GKB GenePA27866
Clinical trialERV3-1
Miscellaneous
canSAR (ICR)ERV3-1 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERV3-1
EVEXERV3-1
GoPubMedERV3-1
iHOPERV3-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:00:20 CEST 2017

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