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ERVK-16 (endogenous retrovirus group K member 16)

Identity

Alias_namesendogenous retrovirus group K, member 16
Alias_symbol (synonym)c10_A.
M3.8
Other aliasc10_A
HGNC (Hugo) ERVK-16
LocusID (NCBI) 100616411
Atlas_Id 79983
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 6825862 and ends at 6826226 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ERVK-16   39023
Cards
Entrez_Gene (NCBI)ERVK-16  100616411  endogenous retrovirus group K member 16
AliasesM3.8; c10_A
GeneCards (Weizmann)ERVK-16
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:6825862-6826226 [Contig_View]  ERVK-16 [Vega]
TCGA cBioPortalERVK-16
AceView (NCBI)ERVK-16
Genatlas (Paris)ERVK-16
WikiGenes100616411
SOURCE (Princeton)ERVK-16
Genetics Home Reference (NIH)ERVK-16
Genomic and cartography
GoldenPath hg38 (UCSC)ERVK-16  -     chr10:6825862-6826226 -  10p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERVK-16  -     10p14   [Description]    (hg19-Feb_2009)
EnsemblERVK-16 - 10p14 [CytoView hg19]  ERVK-16 - 10p14 [CytoView hg38]
Mapping of homologs : NCBIERVK-16 [Mapview hg19]  ERVK-16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)EF543114 FN806841 U87587
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVK-16
Gene ExpressionERVK-16 [ NCBI-GEO ]   ERVK-16 [ EBI - ARRAY_EXPRESS ]   ERVK-16 [ SEEK ]   ERVK-16 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVK-16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100616411
GTEX Portal (Tissue expression)ERVK-16
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61578   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61578  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61578
Splice isoforms : SwissVarP61578
PhosPhoSitePlusP61578
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ERVK-16
DMDM Disease mutations100616411
Blocks (Seattle)ERVK-16
SuperfamilyP61578
Peptide AtlasP61578
Protein Interaction databases
DIP (DOE-UCLA)P61578
IntAct (EBI)P61578
BioGRIDERVK-16
STRING (EMBL)ERVK-16
ZODIACERVK-16
Ontologies - Pathways
QuickGOP61578
Ontology : AmiGORNA binding  nucleolus  cytoplasm  mRNA transport  
Ontology : EGO-EBIRNA binding  nucleolus  cytoplasm  mRNA transport  
NDEx NetworkERVK-16
Atlas of Cancer Signalling NetworkERVK-16
Wikipedia pathwaysERVK-16
Orthology - Evolution
OrthoDB100616411
Phylogenetic Trees/Animal Genes : TreeFamERVK-16
HOVERGENP61578
HOGENOMP61578
Homologs : HomoloGeneERVK-16
Homology/Alignments : Family Browser (UCSC)ERVK-16
Gene fusions - Rearrangements
Fusion : QuiverERVK-16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVK-16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVK-16
dbVarERVK-16
ClinVarERVK-16
1000_GenomesERVK-16 
Exome Variant ServerERVK-16
Genetic variants : HAPMAP100616411
Genomic Variants (DGV)ERVK-16 [DGVbeta]
DECIPHERERVK-16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERVK-16 
Mutations
ICGC Data PortalERVK-16 
TCGA Data PortalERVK-16 
Broad Tumor PortalERVK-16
OASIS PortalERVK-16 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERVK-16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERVK-16
DgiDB (Drug Gene Interaction Database)ERVK-16
DoCM (Curated mutations)ERVK-16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVK-16 (select a term)
intoGenERVK-16
Cancer3DERVK-16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETERVK-16
MedgenERVK-16
Genetic Testing Registry ERVK-16
NextProtP61578 [Medical]
TSGene100616411
GENETestsERVK-16
Target ValidationERVK-16
Huge Navigator ERVK-16 [HugePedia]
snp3D : Map Gene to Disease100616411
BioCentury BCIQERVK-16
ClinGenERVK-16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100616411
Clinical trialERVK-16
Miscellaneous
canSAR (ICR)ERVK-16 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVK-16
EVEXERVK-16
GoPubMedERVK-16
iHOPERVK-16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:17:36 CET 2018
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