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ERVK-19 (endogenous retrovirus group K, member 19)

Identity

Alias_namesendogenous retrovirus group K, member 19
Alias_symbol (synonym)P1.8
HERV-K(C19)
envK3
Other aliaspolymerase
HGNC (Hugo) ERVK-19
LocusID (NCBI) 100862685
Atlas_Id 62911
Location 13q14.13  [Link to chromosome band 13q14]
Location_base_pair Starts at 46858132 and ends at 46858328 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ERVK-19   39026
Cards
Entrez_Gene (NCBI)ERVK-19  100862685  endogenous retrovirus group K, member 19
AliasesHERV-K(C19); P1.8; envK3; polymerase
GeneCards (Weizmann)ERVK-19
Ensembl hg19 (Hinxton) [Gene_View]  chr13:46858132-46858328 [Contig_View]  ERVK-19 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:46858132-46858328 [Contig_View]  ERVK-19 [Vega]
TCGA cBioPortalERVK-19
AceView (NCBI)ERVK-19
Genatlas (Paris)ERVK-19
WikiGenes100862685
SOURCE (Princeton)ERVK-19
Genetics Home Reference (NIH)ERVK-19
Genomic and cartography
GoldenPath hg19 (UCSC)ERVK-19  -     chr13:46858132-46858328 +  13q14.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ERVK-19  -     13q14.13   [Description]    (hg38-Dec_2013)
EnsemblERVK-19 - 13q14.13 [CytoView hg19]  ERVK-19 - 13q14.13 [CytoView hg38]
Mapping of homologs : NCBIERVK-19 [Mapview hg19]  ERVK-19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY395519 U87593
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVK-19
Gene ExpressionERVK-19 [ NCBI-GEO ]   ERVK-19 [ EBI - ARRAY_EXPRESS ]   ERVK-19 [ SEEK ]   ERVK-19 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVK-19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100862685
GTEX Portal (Tissue expression)ERVK-19
Protein : pattern, domain, 3D structure
UniProt/SwissProtO71037   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO71037  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO71037
Splice isoforms : SwissVarO71037
PhosPhoSitePlusO71037
Domains : Interpro (EBI)HERV-K_env    Retroviral_envelope_protein   
Domain families : Pfam (Sanger)GP41 (PF00517)    HERV-K_env_2 (PF13804)   
Domain families : Pfam (NCBI)pfam00517    pfam13804   
Conserved Domain (NCBI)ERVK-19
DMDM Disease mutations100862685
Blocks (Seattle)ERVK-19
SuperfamilyO71037
Peptide AtlasO71037
Protein Interaction databases
DIP (DOE-UCLA)O71037
IntAct (EBI)O71037
BioGRIDERVK-19
STRING (EMBL)ERVK-19
ZODIACERVK-19
Ontologies - Pathways
QuickGOO71037
Ontology : AmiGOstructural molecule activity  plasma membrane  integral component of membrane  viral envelope  
Ontology : EGO-EBIstructural molecule activity  plasma membrane  integral component of membrane  viral envelope  
NDEx NetworkERVK-19
Atlas of Cancer Signalling NetworkERVK-19
Wikipedia pathwaysERVK-19
Orthology - Evolution
OrthoDB100862685
Phylogenetic Trees/Animal Genes : TreeFamERVK-19
HOVERGENO71037
HOGENOMO71037
Homologs : HomoloGeneERVK-19
Homology/Alignments : Family Browser (UCSC)ERVK-19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVK-19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVK-19
dbVarERVK-19
ClinVarERVK-19
1000_GenomesERVK-19 
Exome Variant ServerERVK-19
ExAC (Exome Aggregation Consortium)ERVK-19 (select the gene name)
Genetic variants : HAPMAP100862685
Genomic Variants (DGV)ERVK-19 [DGVbeta]
DECIPHER (Syndromes)13:46858132-46858328  
CONAN: Copy Number AnalysisERVK-19 
Mutations
ICGC Data PortalERVK-19 
TCGA Data PortalERVK-19 
Broad Tumor PortalERVK-19
OASIS PortalERVK-19 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERVK-19
BioMutasearch ERVK-19
DgiDB (Drug Gene Interaction Database)ERVK-19
DoCM (Curated mutations)ERVK-19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVK-19 (select a term)
intoGenERVK-19
Cancer3DERVK-19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenERVK-19
Genetic Testing Registry ERVK-19
NextProtO71037 [Medical]
TSGene100862685
GENETestsERVK-19
Huge Navigator ERVK-19 [HugePedia]
snp3D : Map Gene to Disease100862685
BioCentury BCIQERVK-19
ClinGenERVK-19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100862685
Clinical trialERVK-19
Miscellaneous
canSAR (ICR)ERVK-19 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVK-19
EVEXERVK-19
GoPubMedERVK-19
iHOPERVK-19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:08 CET 2017

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