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ERVK-7 (endogenous retrovirus group K, member 7)

Identity

Alias_namesERVK7
endogenous retroviral sequence K, 7 (type 2)
endogenous retrovirus group K, member 7
Alias_symbol (synonym)HERV-K(III)
HERV-K102
Other aliasHERV-KIII
HGNC (Hugo) ERVK-7
LocusID (NCBI) 449619
Atlas_Id 62914
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155596546 and ends at 155618335 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ERVK-7   31828
Cards
Entrez_Gene (NCBI)ERVK-7  449619  endogenous retrovirus group K, member 7
AliasesERVK7; HERV-K(III); HERV-K102; HERV-KIII
GeneCards (Weizmann)ERVK-7
Ensembl hg19 (Hinxton) [Gene_View]  chr1:155596546-155618335 [Contig_View]  ERVK-7 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:155596546-155618335 [Contig_View]  ERVK-7 [Vega]
TCGA cBioPortalERVK-7
AceView (NCBI)ERVK-7
Genatlas (Paris)ERVK-7
WikiGenes449619
SOURCE (Princeton)ERVK-7
Genetics Home Reference (NIH)ERVK-7
Genomic and cartography
GoldenPath hg19 (UCSC)ERVK-7  -     chr1:155596546-155618335 -  1q22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ERVK-7  -     1q22   [Description]    (hg38-Dec_2013)
EnsemblERVK-7 - 1q22 [CytoView hg19]  ERVK-7 - 1q22 [CytoView hg38]
Mapping of homologs : NCBIERVK-7 [Mapview hg19]  ERVK-7 [Mapview hg38]
OMIM614013   
Gene and transcription
Genbank (Entrez)BC092439
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVK-7
Cluster EST : UnigeneHs.678109 [ NCBI ]
CGAP (NCI)Hs.678109
Gene ExpressionERVK-7 [ NCBI-GEO ]   ERVK-7 [ EBI - ARRAY_EXPRESS ]   ERVK-7 [ SEEK ]   ERVK-7 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVK-7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)449619
GTEX Portal (Tissue expression)ERVK-7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61567   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61567  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61567
Splice isoforms : SwissVarP61567
PhosPhoSitePlusP61567
Domains : Interpro (EBI)HERV-K_env    Retroviral_envelope_protein   
Domain families : Pfam (Sanger)GP41 (PF00517)    HERV-K_env_2 (PF13804)   
Domain families : Pfam (NCBI)pfam00517    pfam13804   
Conserved Domain (NCBI)ERVK-7
DMDM Disease mutations449619
Blocks (Seattle)ERVK-7
SuperfamilyP61567
Peptide AtlasP61567
Protein Interaction databases
DIP (DOE-UCLA)P61567
IntAct (EBI)P61567
BioGRIDERVK-7
STRING (EMBL)ERVK-7
ZODIACERVK-7
Ontologies - Pathways
QuickGOP61567
Ontology : AmiGOstructural molecule activity  plasma membrane  integral component of membrane  viral envelope  
Ontology : EGO-EBIstructural molecule activity  plasma membrane  integral component of membrane  viral envelope  
NDEx NetworkERVK-7
Atlas of Cancer Signalling NetworkERVK-7
Wikipedia pathwaysERVK-7
Orthology - Evolution
OrthoDB449619
Phylogenetic Trees/Animal Genes : TreeFamERVK-7
HOVERGENP61567
HOGENOMP61567
Homologs : HomoloGeneERVK-7
Homology/Alignments : Family Browser (UCSC)ERVK-7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVK-7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVK-7
dbVarERVK-7
ClinVarERVK-7
1000_GenomesERVK-7 
Exome Variant ServerERVK-7
ExAC (Exome Aggregation Consortium)ERVK-7 (select the gene name)
Genetic variants : HAPMAP449619
Genomic Variants (DGV)ERVK-7 [DGVbeta]
DECIPHER (Syndromes)1:155596546-155618335  
CONAN: Copy Number AnalysisERVK-7 
Mutations
ICGC Data PortalERVK-7 
TCGA Data PortalERVK-7 
Broad Tumor PortalERVK-7
OASIS PortalERVK-7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERVK-7
BioMutasearch ERVK-7
DgiDB (Drug Gene Interaction Database)ERVK-7
DoCM (Curated mutations)ERVK-7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVK-7 (select a term)
intoGenERVK-7
Cancer3DERVK-7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614013   
Orphanet
MedgenERVK-7
Genetic Testing Registry ERVK-7
NextProtP61567 [Medical]
TSGene449619
GENETestsERVK-7
Huge Navigator ERVK-7 [HugePedia]
snp3D : Map Gene to Disease449619
BioCentury BCIQERVK-7
ClinGenERVK-7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD449619
Chemical/Pharm GKB GenePA134974353
Clinical trialERVK-7
Miscellaneous
canSAR (ICR)ERVK-7 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVK-7
EVEXERVK-7
GoPubMedERVK-7
iHOPERVK-7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:09 CET 2017

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