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ERVK-9 (endogenous retrovirus group K member 9)

Identity

Alias_namesendogenous retrovirus group K, member 9
Other aliasPR
Protease
Proteinase
polymerase
HGNC (Hugo) ERVK-9
LocusID (NCBI) 100616102
Atlas_Id 78902
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 4594755 and ends at 4596472 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ERVK-9   39005
Cards
Entrez_Gene (NCBI)ERVK-9  100616102  endogenous retrovirus group K member 9
AliasesPR; Protease; Proteinase; polymerase
GeneCards (Weizmann)ERVK-9
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr7:4594755-4596472 [Contig_View]  ERVK-9 [Vega]
TCGA cBioPortalERVK-9
AceView (NCBI)ERVK-9
Genatlas (Paris)ERVK-9
WikiGenes100616102
SOURCE (Princeton)ERVK-9
Genetics Home Reference (NIH)ERVK-9
Genomic and cartography
GoldenPath hg38 (UCSC)ERVK-9  -     chr7:4594755-4596472 -  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERVK-9  -     7p22.1   [Description]    (hg19-Feb_2009)
EnsemblERVK-9 - 7p22.1 [CytoView hg19]  ERVK-9 - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBIERVK-9 [Mapview hg19]  ERVK-9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF080234 AY371030 FN806836
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVK-9
Gene ExpressionERVK-9 [ NCBI-GEO ]   ERVK-9 [ EBI - ARRAY_EXPRESS ]   ERVK-9 [ SEEK ]   ERVK-9 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVK-9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100616102
GTEX Portal (Tissue expression)ERVK-9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKH3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKH3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKH3
Splice isoforms : SwissVarQ9UKH3
PhosPhoSitePlusQ9UKH3
Domains : Interpro (EBI)GP41-like    HERV-K_env   
Domain families : Pfam (Sanger)GP41 (PF00517)    HERV-K_env_2 (PF13804)   
Domain families : Pfam (NCBI)pfam00517    pfam13804   
Conserved Domain (NCBI)ERVK-9
DMDM Disease mutations100616102
Blocks (Seattle)ERVK-9
SuperfamilyQ9UKH3
Peptide AtlasQ9UKH3
Protein Interaction databases
DIP (DOE-UCLA)Q9UKH3
IntAct (EBI)Q9UKH3
BioGRIDERVK-9
STRING (EMBL)ERVK-9
ZODIACERVK-9
Ontologies - Pathways
QuickGOQ9UKH3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkERVK-9
Atlas of Cancer Signalling NetworkERVK-9
Wikipedia pathwaysERVK-9
Orthology - Evolution
OrthoDB100616102
Phylogenetic Trees/Animal Genes : TreeFamERVK-9
HOVERGENQ9UKH3
HOGENOMQ9UKH3
Homologs : HomoloGeneERVK-9
Homology/Alignments : Family Browser (UCSC)ERVK-9
Gene fusions - Rearrangements
Fusion : QuiverERVK-9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVK-9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVK-9
dbVarERVK-9
ClinVarERVK-9
1000_GenomesERVK-9 
Exome Variant ServerERVK-9
Varsome BrowserERVK-9
Genetic variants : HAPMAP100616102
Genomic Variants (DGV)ERVK-9 [DGVbeta]
DECIPHERERVK-9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERVK-9 
Mutations
ICGC Data PortalERVK-9 
TCGA Data PortalERVK-9 
Broad Tumor PortalERVK-9
OASIS PortalERVK-9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERVK-9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERVK-9
DgiDB (Drug Gene Interaction Database)ERVK-9
DoCM (Curated mutations)ERVK-9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVK-9 (select a term)
intoGenERVK-9
Cancer3DERVK-9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETERVK-9
MedgenERVK-9
Genetic Testing Registry ERVK-9
NextProtQ9UKH3 [Medical]
TSGene100616102
GENETestsERVK-9
Target ValidationERVK-9
Huge Navigator ERVK-9 [HugePedia]
snp3D : Map Gene to Disease100616102
BioCentury BCIQERVK-9
ClinGenERVK-9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100616102
Clinical trialERVK-9
Miscellaneous
canSAR (ICR)ERVK-9 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVK-9
EVEXERVK-9
GoPubMedERVK-9
iHOPERVK-9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:44:15 CEST 2018

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