Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ERVK11-1 (endogenous retrovirus group K11 member 1)

Identity

Alias_namesendogenous retrovirus group K11, member 1
Other alias-
HGNC (Hugo) ERVK11-1
LocusID (NCBI) 100859922
Atlas_Id 79687
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 109705231 and ends at 109709551 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ERVK11-1   43647
Cards
Entrez_Gene (NCBI)ERVK11-1  100859922  endogenous retrovirus group K11 member 1
Aliases
GeneCards (Weizmann)ERVK11-1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:109705231-109709551 [Contig_View]  ERVK11-1 [Vega]
TCGA cBioPortalERVK11-1
AceView (NCBI)ERVK11-1
Genatlas (Paris)ERVK11-1
WikiGenes100859922
SOURCE (Princeton)ERVK11-1
Genetics Home Reference (NIH)ERVK11-1
Genomic and cartography
GoldenPath hg38 (UCSC)ERVK11-1  -     chr1:109705231-109709551 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERVK11-1  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblERVK11-1 - 1p13.3 [CytoView hg19]  ERVK11-1 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBIERVK11-1 [Mapview hg19]  ERVK11-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126628 AK128832
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVK11-1
Gene ExpressionERVK11-1 [ NCBI-GEO ]   ERVK11-1 [ EBI - ARRAY_EXPRESS ]   ERVK11-1 [ SEEK ]   ERVK11-1 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVK11-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100859922
GTEX Portal (Tissue expression)ERVK11-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61568   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61568  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61568
Splice isoforms : SwissVarP61568
PhosPhoSitePlusP61568
Domains : Interpro (EBI)HERV-K_env   
Domain families : Pfam (Sanger)HERV-K_env_2 (PF13804)   
Domain families : Pfam (NCBI)pfam13804   
Conserved Domain (NCBI)ERVK11-1
DMDM Disease mutations100859922
Blocks (Seattle)ERVK11-1
SuperfamilyP61568
Peptide AtlasP61568
Protein Interaction databases
DIP (DOE-UCLA)P61568
IntAct (EBI)P61568
BioGRIDERVK11-1
STRING (EMBL)ERVK11-1
ZODIACERVK11-1
Ontologies - Pathways
QuickGOP61568
Ontology : AmiGOviral envelope  
Ontology : EGO-EBIviral envelope  
NDEx NetworkERVK11-1
Atlas of Cancer Signalling NetworkERVK11-1
Wikipedia pathwaysERVK11-1
Orthology - Evolution
OrthoDB100859922
Phylogenetic Trees/Animal Genes : TreeFamERVK11-1
HOVERGENP61568
HOGENOMP61568
Homologs : HomoloGeneERVK11-1
Homology/Alignments : Family Browser (UCSC)ERVK11-1
Gene fusions - Rearrangements
Tumor Fusion PortalERVK11-1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVK11-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVK11-1
dbVarERVK11-1
ClinVarERVK11-1
1000_GenomesERVK11-1 
Exome Variant ServerERVK11-1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100859922
Genomic Variants (DGV)ERVK11-1 [DGVbeta]
DECIPHERERVK11-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERVK11-1 
Mutations
ICGC Data PortalERVK11-1 
TCGA Data PortalERVK11-1 
Broad Tumor PortalERVK11-1
OASIS PortalERVK11-1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERVK11-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERVK11-1
DgiDB (Drug Gene Interaction Database)ERVK11-1
DoCM (Curated mutations)ERVK11-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVK11-1 (select a term)
intoGenERVK11-1
Cancer3DERVK11-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETERVK11-1
MedgenERVK11-1
Genetic Testing Registry ERVK11-1
NextProtP61568 [Medical]
TSGene100859922
GENETestsERVK11-1
Target ValidationERVK11-1
Huge Navigator ERVK11-1 [HugePedia]
snp3D : Map Gene to Disease100859922
BioCentury BCIQERVK11-1
ClinGenERVK11-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100859922
Clinical trialERVK11-1
Miscellaneous
canSAR (ICR)ERVK11-1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVK11-1
EVEXERVK11-1
GoPubMedERVK11-1
iHOPERVK11-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:00:00 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.