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ERVK13-1 (endogenous retrovirus group K13 member 1)

Identity

Alias_namesendogenous retrovirus group K13, member 1
Other alias-
HGNC (Hugo) ERVK13-1
LocusID (NCBI) 100507321
Atlas_Id 78171
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2661193 and ends at 2662394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ERVK13-1   27548
Cards
Entrez_Gene (NCBI)ERVK13-1  100507321  endogenous retrovirus group K13 member 1
Aliases
GeneCards (Weizmann)ERVK13-1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:2661193-2662394 [Contig_View]  ERVK13-1 [Vega]
TCGA cBioPortalERVK13-1
AceView (NCBI)ERVK13-1
Genatlas (Paris)ERVK13-1
WikiGenes100507321
SOURCE (Princeton)ERVK13-1
Genetics Home Reference (NIH)ERVK13-1
Genomic and cartography
GoldenPath hg38 (UCSC)ERVK13-1  -     chr16:2661193-2662394 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERVK13-1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblERVK13-1 - 16p13.3 [CytoView hg19]  ERVK13-1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIERVK13-1 [Mapview hg19]  ERVK13-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000400 AK091794 AK095440 AK097014 AK097909
RefSeq transcript (Entrez)NM_001012731
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVK13-1
Cluster EST : UnigeneHs.406976 [ NCBI ]
CGAP (NCI)Hs.406976
Gene ExpressionERVK13-1 [ NCBI-GEO ]   ERVK13-1 [ EBI - ARRAY_EXPRESS ]   ERVK13-1 [ SEEK ]   ERVK13-1 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVK13-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507321
GTEX Portal (Tissue expression)ERVK13-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX77
Splice isoforms : SwissVarQ9NX77
PhosPhoSitePlusQ9NX77
Domains : Interpro (EBI)GP41-like    HERV-K_env   
Domain families : Pfam (Sanger)GP41 (PF00517)    HERV-K_env_2 (PF13804)   
Domain families : Pfam (NCBI)pfam00517    pfam13804   
Conserved Domain (NCBI)ERVK13-1
DMDM Disease mutations100507321
Blocks (Seattle)ERVK13-1
SuperfamilyQ9NX77
Peptide AtlasQ9NX77
IPIIPI00015800   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX77
IntAct (EBI)Q9NX77
BioGRIDERVK13-1
STRING (EMBL)ERVK13-1
ZODIACERVK13-1
Ontologies - Pathways
QuickGOQ9NX77
Ontology : AmiGOstructural molecule activity  plasma membrane  integral component of membrane  viral envelope  
Ontology : EGO-EBIstructural molecule activity  plasma membrane  integral component of membrane  viral envelope  
NDEx NetworkERVK13-1
Atlas of Cancer Signalling NetworkERVK13-1
Wikipedia pathwaysERVK13-1
Orthology - Evolution
OrthoDB100507321
Phylogenetic Trees/Animal Genes : TreeFamERVK13-1
HOVERGENQ9NX77
HOGENOMQ9NX77
Homologs : HomoloGeneERVK13-1
Homology/Alignments : Family Browser (UCSC)ERVK13-1
Gene fusions - Rearrangements
Tumor Fusion PortalERVK13-1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVK13-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVK13-1
dbVarERVK13-1
ClinVarERVK13-1
1000_GenomesERVK13-1 
Exome Variant ServerERVK13-1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100507321
Genomic Variants (DGV)ERVK13-1 [DGVbeta]
DECIPHERERVK13-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERVK13-1 
Mutations
ICGC Data PortalERVK13-1 
TCGA Data PortalERVK13-1 
Broad Tumor PortalERVK13-1
OASIS PortalERVK13-1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERVK13-1
BioMutasearch ERVK13-1
DgiDB (Drug Gene Interaction Database)ERVK13-1
DoCM (Curated mutations)ERVK13-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVK13-1 (select a term)
intoGenERVK13-1
Cancer3DERVK13-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETERVK13-1
MedgenERVK13-1
Genetic Testing Registry ERVK13-1
NextProtQ9NX77 [Medical]
TSGene100507321
GENETestsERVK13-1
Target ValidationERVK13-1
Huge Navigator ERVK13-1 [HugePedia]
snp3D : Map Gene to Disease100507321
BioCentury BCIQERVK13-1
ClinGenERVK13-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507321
Clinical trialERVK13-1
Miscellaneous
canSAR (ICR)ERVK13-1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVK13-1
EVEXERVK13-1
GoPubMedERVK13-1
iHOPERVK13-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:33:12 CET 2017

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