Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ERVK3-1 (endogenous retrovirus group K3, member 1)

Identity

Alias_namesendogenous retrovirus group K3, member 1
Alias_symbol (synonym)HERV-K(HML6-1)
Other alias-
HGNC (Hugo) ERVK3-1
LocusID (NCBI) 100507739
Atlas_Id 62912
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58816743 and ends at 58827018 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ERVK3-1 (19q13.43) / FGFR1 (8p11.23)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ERVK3-1   30466
Cards
Entrez_Gene (NCBI)ERVK3-1  100507739  endogenous retrovirus group K3, member 1
Aliases
GeneCards (Weizmann)ERVK3-1
Ensembl hg19 (Hinxton) [Gene_View]  chr19:58816743-58827018 [Contig_View]  ERVK3-1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:58816743-58827018 [Contig_View]  ERVK3-1 [Vega]
TCGA cBioPortalERVK3-1
AceView (NCBI)ERVK3-1
Genatlas (Paris)ERVK3-1
WikiGenes100507739
SOURCE (Princeton)ERVK3-1
Genetics Home Reference (NIH)ERVK3-1
Genomic and cartography
GoldenPath hg19 (UCSC)ERVK3-1  -     chr19:58816743-58827018 +  19q13.43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ERVK3-1  -     19q13.43   [Description]    (hg38-Dec_2013)
EnsemblERVK3-1 - 19q13.43 [CytoView hg19]  ERVK3-1 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIERVK3-1 [Mapview hg19]  ERVK3-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK054868 BC010118 BC011670
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)AC_000151 NC_000019 NT_011109 NW_001838501
Consensus coding sequences : CCDS (NCBI)ERVK3-1
Gene ExpressionERVK3-1 [ NCBI-GEO ]   ERVK3-1 [ EBI - ARRAY_EXPRESS ]   ERVK3-1 [ SEEK ]   ERVK3-1 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVK3-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507739
GTEX Portal (Tissue expression)ERVK3-1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ERVK3-1
DMDM Disease mutations100507739
Blocks (Seattle)ERVK3-1
Protein Interaction databases
BioGRIDERVK3-1
STRING (EMBL)ERVK3-1
ZODIACERVK3-1
Ontologies - Pathways
Huge Navigator ERVK3-1 [HugePedia]
snp3D : Map Gene to Disease100507739
BioCentury BCIQERVK3-1
ClinGenERVK3-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507739
Clinical trialERVK3-1
Miscellaneous
canSAR (ICR)ERVK3-1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVK3-1
EVEXERVK3-1
GoPubMedERVK3-1
iHOPERVK3-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:03:09 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.