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ERVK3-3 (endogenous retrovirus group K3 member 3)

Identity

Alias_namesendogenous retrovirus group K3, member 3
Alias_symbol (synonym)HML6-c5
Other alias
HGNC (Hugo) ERVK3-3
LocusID (NCBI) 100616462
Atlas_Id 79696
Location 5_KI270897v1_alt  [Link to chromosome band 5]
Location_base_pair Starts at 1105613 and ends at 1105950 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ERVK3-3   39108
Cards
Entrez_Gene (NCBI)ERVK3-3  100616462  endogenous retrovirus group K3 member 3
AliasesHML6-c5
GeneCards (Weizmann)ERVK3-3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5_KI270897v1_alt:1105613-1105950 [Contig_View]  ERVK3-3 [Vega]
TCGA cBioPortalERVK3-3
AceView (NCBI)ERVK3-3
Genatlas (Paris)ERVK3-3
WikiGenes100616462
SOURCE (Princeton)ERVK3-3
Genetics Home Reference (NIH)ERVK3-3
Genomic and cartography
GoldenPath hg38 (UCSC)ERVK3-3  -     chr5_KI270897v1_alt:1105613-1105950 +  5_KI270897v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERVK3-3  -     5_KI270897v1_alt   [Description]    (hg19-Feb_2009)
EnsemblERVK3-3 - 5_KI270897v1_alt [CytoView hg19]  ERVK3-3 - 5_KI270897v1_alt [CytoView hg38]
Mapping of homologs : NCBIERVK3-3 [Mapview hg19]  ERVK3-3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)FR714893
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVK3-3
Gene ExpressionERVK3-3 [ NCBI-GEO ]   ERVK3-3 [ EBI - ARRAY_EXPRESS ]   ERVK3-3 [ SEEK ]   ERVK3-3 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVK3-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100616462
GTEX Portal (Tissue expression)ERVK3-3
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ERVK3-3
DMDM Disease mutations100616462
Blocks (Seattle)ERVK3-3
Protein Interaction databases
BioGRIDERVK3-3
STRING (EMBL)ERVK3-3
ZODIACERVK3-3
Ontologies - Pathways
Huge Navigator ERVK3-3 [HugePedia]
snp3D : Map Gene to Disease100616462
BioCentury BCIQERVK3-3
ClinGenERVK3-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100616462
Clinical trialERVK3-3
Miscellaneous
canSAR (ICR)ERVK3-3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVK3-3
EVEXERVK3-3
GoPubMedERVK3-3
iHOPERVK3-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:11:38 CET 2017

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