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ERVK3-5 (endogenous retrovirus group K3 member 5)

Identity

Alias_namesendogenous retrovirus group K3, member 5
Alias_symbol (synonym)HML6-c12
Other alias
HGNC (Hugo) ERVK3-5
LocusID (NCBI) 100616412
Atlas_Id 78906
Location 12q24.12  [Link to chromosome band 12q24]
Location_base_pair Starts at 111821847 and ends at 111822182 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ERVK3-5   39110
Cards
Entrez_Gene (NCBI)ERVK3-5  100616412  endogenous retrovirus group K3 member 5
AliasesHML6-c12
GeneCards (Weizmann)ERVK3-5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:111821847-111822182 [Contig_View]  ERVK3-5 [Vega]
TCGA cBioPortalERVK3-5
AceView (NCBI)ERVK3-5
Genatlas (Paris)ERVK3-5
WikiGenes100616412
SOURCE (Princeton)ERVK3-5
Genetics Home Reference (NIH)ERVK3-5
Genomic and cartography
GoldenPath hg38 (UCSC)ERVK3-5  -     chr12:111821847-111822182 -  12q24.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERVK3-5  -     12q24.12   [Description]    (hg19-Feb_2009)
EnsemblERVK3-5 - 12q24.12 [CytoView hg19]  ERVK3-5 - 12q24.12 [CytoView hg38]
Mapping of homologs : NCBIERVK3-5 [Mapview hg19]  ERVK3-5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)FR714895
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVK3-5
Gene ExpressionERVK3-5 [ NCBI-GEO ]   ERVK3-5 [ EBI - ARRAY_EXPRESS ]   ERVK3-5 [ SEEK ]   ERVK3-5 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVK3-5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100616412
GTEX Portal (Tissue expression)ERVK3-5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ERVK3-5
DMDM Disease mutations100616412
Blocks (Seattle)ERVK3-5
Protein Interaction databases
BioGRIDERVK3-5
STRING (EMBL)ERVK3-5
ZODIACERVK3-5
Ontologies - Pathways
Huge Navigator ERVK3-5 [HugePedia]
snp3D : Map Gene to Disease100616412
BioCentury BCIQERVK3-5
ClinGenERVK3-5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100616412
Clinical trialERVK3-5
Miscellaneous
canSAR (ICR)ERVK3-5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVK3-5
EVEXERVK3-5
GoPubMedERVK3-5
iHOPERVK3-5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:26:05 CET 2017

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