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ERVMER34-1 (endogenous retrovirus group MER34 member 1, envelope)

Identity

Alias_namesendogenous retrovirus group MER34, member 1
Other aliasenvMER34
HGNC (Hugo) ERVMER34-1
LocusID (NCBI) 100288413
Atlas_Id 62915
Location 4q12  [Link to chromosome band 4q12]
Location_base_pair Starts at 52743517 and ends at 52751640 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ERVMER34-1   42970
Cards
Entrez_Gene (NCBI)ERVMER34-1  100288413  endogenous retrovirus group MER34 member 1, envelope
AliasesenvMER34
GeneCards (Weizmann)ERVMER34-1
Ensembl hg19 (Hinxton)ENSG00000226887 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226887 [Gene_View]  chr4:52743517-52751640 [Contig_View]  ERVMER34-1 [Vega]
ICGC DataPortalENSG00000226887
TCGA cBioPortalERVMER34-1
AceView (NCBI)ERVMER34-1
Genatlas (Paris)ERVMER34-1
WikiGenes100288413
SOURCE (Princeton)ERVMER34-1
Genetics Home Reference (NIH)ERVMER34-1
Genomic and cartography
GoldenPath hg38 (UCSC)ERVMER34-1  -     chr4:52743517-52751640 -  4q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERVMER34-1  -     4q12   [Description]    (hg19-Feb_2009)
EnsemblERVMER34-1 - 4q12 [CytoView hg19]  ERVMER34-1 - 4q12 [CytoView hg38]
Mapping of homologs : NCBIERVMER34-1 [Mapview hg19]  ERVMER34-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022746 AY189288 BC067526 BC067527 BC067528
RefSeq transcript (Entrez)NM_001242690 NM_024534
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVMER34-1
Cluster EST : UnigeneHs.363087 [ NCBI ]
CGAP (NCI)Hs.363087
Alternative Splicing GalleryENSG00000226887
Gene ExpressionERVMER34-1 [ NCBI-GEO ]   ERVMER34-1 [ EBI - ARRAY_EXPRESS ]   ERVMER34-1 [ SEEK ]   ERVMER34-1 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVMER34-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100288413
GTEX Portal (Tissue expression)ERVMER34-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9K5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9K5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9K5
Splice isoforms : SwissVarQ9H9K5
PhosPhoSitePlusQ9H9K5
Domains : Interpro (EBI)TLV/ENV_coat_polyprotein   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ERVMER34-1
DMDM Disease mutations100288413
Blocks (Seattle)ERVMER34-1
SuperfamilyQ9H9K5
Human Protein AtlasENSG00000226887
Peptide AtlasQ9H9K5
IPIIPI00002191   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9K5
IntAct (EBI)Q9H9K5
FunCoupENSG00000226887
BioGRIDERVMER34-1
STRING (EMBL)ERVMER34-1
ZODIACERVMER34-1
Ontologies - Pathways
QuickGOQ9H9K5
Ontology : AmiGOintegral component of membrane  viral envelope  
Ontology : EGO-EBIintegral component of membrane  viral envelope  
NDEx NetworkERVMER34-1
Atlas of Cancer Signalling NetworkERVMER34-1
Wikipedia pathwaysERVMER34-1
Orthology - Evolution
OrthoDB100288413
GeneTree (enSembl)ENSG00000226887
Phylogenetic Trees/Animal Genes : TreeFamERVMER34-1
HOVERGENQ9H9K5
HOGENOMQ9H9K5
Homologs : HomoloGeneERVMER34-1
Homology/Alignments : Family Browser (UCSC)ERVMER34-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVMER34-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVMER34-1
dbVarERVMER34-1
ClinVarERVMER34-1
1000_GenomesERVMER34-1 
Exome Variant ServerERVMER34-1
ExAC (Exome Aggregation Consortium)ERVMER34-1 (select the gene name)
Genetic variants : HAPMAP100288413
Genomic Variants (DGV)ERVMER34-1 [DGVbeta]
DECIPHERERVMER34-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERVMER34-1 
Mutations
ICGC Data PortalERVMER34-1 
TCGA Data PortalERVMER34-1 
Broad Tumor PortalERVMER34-1
OASIS PortalERVMER34-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICERVMER34-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDERVMER34-1
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch ERVMER34-1
DgiDB (Drug Gene Interaction Database)ERVMER34-1
DoCM (Curated mutations)ERVMER34-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVMER34-1 (select a term)
intoGenERVMER34-1
Cancer3DERVMER34-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenERVMER34-1
Genetic Testing Registry ERVMER34-1
NextProtQ9H9K5 [Medical]
TSGene100288413
GENETestsERVMER34-1
Target ValidationERVMER34-1
Huge Navigator ERVMER34-1 [HugePedia]
snp3D : Map Gene to Disease100288413
BioCentury BCIQERVMER34-1
ClinGenERVMER34-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288413
Clinical trialERVMER34-1
Miscellaneous
canSAR (ICR)ERVMER34-1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVMER34-1
EVEXERVMER34-1
GoPubMedERVMER34-1
iHOPERVMER34-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:20 CEST 2017

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