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ERVPABLB-1 (endogenous retrovirus group PABLB member 1, envelope)

Identity

Other aliasenvR(b)
HGNC (Hugo) ERVPABLB-1
LocusID (NCBI) 100862693
Atlas_Id 56968
Location 3p24.3  [Link to chromosome band 3p24]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ERVPABLB-1   39042
Cards
Entrez_Gene (NCBI)ERVPABLB-1  100862693  endogenous retrovirus group PABLB member 1, envelope
AliasesenvR(b)
GeneCards (Weizmann)ERVPABLB-1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  ERVPABLB-1 [Vega]
TCGA cBioPortalERVPABLB-1
AceView (NCBI)ERVPABLB-1
Genatlas (Paris)ERVPABLB-1
WikiGenes100862693
SOURCE (Princeton)ERVPABLB-1
Genetics Home Reference (NIH)ERVPABLB-1
Genomic and cartography
GoldenPath hg38 (UCSC)ERVPABLB-1  -  
GoldenPath hg19 (UCSC)ERVPABLB-1  -  
EnsemblERVPABLB-1 - [CytoView hg19]  ERVPABLB-1 - [CytoView hg38]
Mapping of homologs : NCBIERVPABLB-1 [Mapview hg19]  ERVPABLB-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI189490 BQ012865 CF529244
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVPABLB-1
Gene ExpressionERVPABLB-1 [ NCBI-GEO ]   ERVPABLB-1 [ EBI - ARRAY_EXPRESS ]   ERVPABLB-1 [ SEEK ]   ERVPABLB-1 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVPABLB-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100862693
GTEX Portal (Tissue expression)ERVPABLB-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60509   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60509  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60509
Splice isoforms : SwissVarP60509
PhosPhoSitePlusP60509
Domains : Interpro (EBI)TLV/ENV_coat_polyprotein   
Domain families : Pfam (Sanger)TLV_coat (PF00429)   
Domain families : Pfam (NCBI)pfam00429   
Conserved Domain (NCBI)ERVPABLB-1
DMDM Disease mutations100862693
Blocks (Seattle)ERVPABLB-1
SuperfamilyP60509
Peptide AtlasP60509
Protein Interaction databases
DIP (DOE-UCLA)P60509
IntAct (EBI)P60509
BioGRIDERVPABLB-1
STRING (EMBL)ERVPABLB-1
ZODIACERVPABLB-1
Ontologies - Pathways
QuickGOP60509
Ontology : AmiGOmolecular_function  cellular_component  plasma membrane  integral component of membrane  plasma membrane fusion  
Ontology : EGO-EBImolecular_function  cellular_component  plasma membrane  integral component of membrane  plasma membrane fusion  
NDEx NetworkERVPABLB-1
Atlas of Cancer Signalling NetworkERVPABLB-1
Wikipedia pathwaysERVPABLB-1
Orthology - Evolution
OrthoDB100862693
Phylogenetic Trees/Animal Genes : TreeFamERVPABLB-1
HOVERGENP60509
HOGENOMP60509
Homologs : HomoloGeneERVPABLB-1
Homology/Alignments : Family Browser (UCSC)ERVPABLB-1
Gene fusions - Rearrangements
Tumor Fusion PortalERVPABLB-1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVPABLB-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVPABLB-1
dbVarERVPABLB-1
ClinVarERVPABLB-1
1000_GenomesERVPABLB-1 
Exome Variant ServerERVPABLB-1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100862693
Genomic Variants (DGV)ERVPABLB-1 [DGVbeta]
DECIPHERERVPABLB-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERVPABLB-1 
Mutations
ICGC Data PortalERVPABLB-1 
TCGA Data PortalERVPABLB-1 
Broad Tumor PortalERVPABLB-1
OASIS PortalERVPABLB-1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERVPABLB-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERVPABLB-1
DgiDB (Drug Gene Interaction Database)ERVPABLB-1
DoCM (Curated mutations)ERVPABLB-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVPABLB-1 (select a term)
intoGenERVPABLB-1
Cancer3DERVPABLB-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETERVPABLB-1
MedgenERVPABLB-1
Genetic Testing Registry ERVPABLB-1
NextProtP60509 [Medical]
TSGene100862693
GENETestsERVPABLB-1
Target ValidationERVPABLB-1
Huge Navigator ERVPABLB-1 [HugePedia]
snp3D : Map Gene to Disease100862693
BioCentury BCIQERVPABLB-1
ClinGenERVPABLB-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100862693
Clinical trialERVPABLB-1
Miscellaneous
canSAR (ICR)ERVPABLB-1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVPABLB-1
EVEXERVPABLB-1
GoPubMedERVPABLB-1
iHOPERVPABLB-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:12:19 CET 2017

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