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ERVV-1 (endogenous retrovirus group V, member 1)

Identity

Alias_namesendogenous retrovirus group V, member 1
Alias_symbol (synonym)FLJ32214
HERV-V1
ENVV1
Other alias
HGNC (Hugo) ERVV-1
LocusID (NCBI) 147664
Atlas_Id 62917
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 53517344 and ends at 53519833 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ERVV-1   26501
Cards
Entrez_Gene (NCBI)ERVV-1  147664  endogenous retrovirus group V, member 1
AliasesENVV1; HERV-V1
GeneCards (Weizmann)ERVV-1
Ensembl hg19 (Hinxton) [Gene_View]  chr19:53517344-53519833 [Contig_View]  ERVV-1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:53517344-53519833 [Contig_View]  ERVV-1 [Vega]
TCGA cBioPortalERVV-1
AceView (NCBI)ERVV-1
Genatlas (Paris)ERVV-1
WikiGenes147664
SOURCE (Princeton)ERVV-1
Genetics Home Reference (NIH)ERVV-1
Genomic and cartography
GoldenPath hg19 (UCSC)ERVV-1  -     chr19:53517344-53519833 +  19q13.41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ERVV-1  -     19q13.41   [Description]    (hg38-Dec_2013)
EnsemblERVV-1 - 19q13.41 [CytoView hg19]  ERVV-1 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIERVV-1 [Mapview hg19]  ERVV-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056776 BC104018 BC104019 BC104020 BC113852
RefSeq transcript (Entrez)NM_152473
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ERVV-1
Cluster EST : UnigeneHs.44329 [ NCBI ]
CGAP (NCI)Hs.44329
Gene ExpressionERVV-1 [ NCBI-GEO ]   ERVV-1 [ EBI - ARRAY_EXPRESS ]   ERVV-1 [ SEEK ]   ERVV-1 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVV-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147664
GTEX Portal (Tissue expression)ERVV-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtB6SEH8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB6SEH8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB6SEH8
Splice isoforms : SwissVarB6SEH8
PhosPhoSitePlusB6SEH8
Domains : Interpro (EBI)TLV/ENV_coat_polyprotein   
Domain families : Pfam (Sanger)TLV_coat (PF00429)   
Domain families : Pfam (NCBI)pfam00429   
Conserved Domain (NCBI)ERVV-1
DMDM Disease mutations147664
Blocks (Seattle)ERVV-1
SuperfamilyB6SEH8
Peptide AtlasB6SEH8
HPRD08124
IPIIPI00984427   
Protein Interaction databases
DIP (DOE-UCLA)B6SEH8
IntAct (EBI)B6SEH8
BioGRIDERVV-1
STRING (EMBL)ERVV-1
ZODIACERVV-1
Ontologies - Pathways
QuickGOB6SEH8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkERVV-1
Atlas of Cancer Signalling NetworkERVV-1
Wikipedia pathwaysERVV-1
Orthology - Evolution
OrthoDB147664
Phylogenetic Trees/Animal Genes : TreeFamERVV-1
HOVERGENB6SEH8
HOGENOMB6SEH8
Homologs : HomoloGeneERVV-1
Homology/Alignments : Family Browser (UCSC)ERVV-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVV-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVV-1
dbVarERVV-1
ClinVarERVV-1
1000_GenomesERVV-1 
Exome Variant ServerERVV-1
ExAC (Exome Aggregation Consortium)ERVV-1 (select the gene name)
Genetic variants : HAPMAP147664
Genomic Variants (DGV)ERVV-1 [DGVbeta]
DECIPHER (Syndromes)19:53517344-53519833  
CONAN: Copy Number AnalysisERVV-1 
Mutations
ICGC Data PortalERVV-1 
TCGA Data PortalERVV-1 
Broad Tumor PortalERVV-1
OASIS PortalERVV-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICERVV-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDERVV-1
BioMutasearch ERVV-1
DgiDB (Drug Gene Interaction Database)ERVV-1
DoCM (Curated mutations)ERVV-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVV-1 (select a term)
intoGenERVV-1
Cancer3DERVV-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenERVV-1
Genetic Testing Registry ERVV-1
NextProtB6SEH8 [Medical]
TSGene147664
GENETestsERVV-1
Huge Navigator ERVV-1 [HugePedia]
snp3D : Map Gene to Disease147664
BioCentury BCIQERVV-1
ClinGenERVV-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147664
Clinical trialERVV-1
Miscellaneous
canSAR (ICR)ERVV-1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVV-1
EVEXERVV-1
GoPubMedERVV-1
iHOPERVV-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:10 CET 2017

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