Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ERVV-2 (endogenous retrovirus group V member 2, envelope)

Identity

Alias_namesendogenous retrovirus group V, member 2
Other aliasENVV2
HERV-V2
HGNC (Hugo) ERVV-2
LocusID (NCBI) 100271846
Atlas_Id 62918
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 53044738 and ends at 53051127 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ERVV-2 (19q13.41) / SDC1 (2p24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ERVV-2   39051
Cards
Entrez_Gene (NCBI)ERVV-2  100271846  endogenous retrovirus group V member 2, envelope
AliasesENVV2; HERV-V2
GeneCards (Weizmann)ERVV-2
Ensembl hg19 (Hinxton)ENSG00000268964 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000268964 [Gene_View]  chr19:53044738-53051127 [Contig_View]  ERVV-2 [Vega]
ICGC DataPortalENSG00000268964
TCGA cBioPortalERVV-2
AceView (NCBI)ERVV-2
Genatlas (Paris)ERVV-2
WikiGenes100271846
SOURCE (Princeton)ERVV-2
Genetics Home Reference (NIH)ERVV-2
Genomic and cartography
GoldenPath hg38 (UCSC)ERVV-2  -     chr19:53044738-53051127 +  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERVV-2  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblERVV-2 - 19q13.41 [CytoView hg19]  ERVV-2 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIERVV-2 [Mapview hg19]  ERVV-2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DA863698
RefSeq transcript (Entrez)NM_001191055
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERVV-2
Cluster EST : UnigeneHs.420445 [ NCBI ]
CGAP (NCI)Hs.420445
Alternative Splicing GalleryENSG00000268964
Gene ExpressionERVV-2 [ NCBI-GEO ]   ERVV-2 [ EBI - ARRAY_EXPRESS ]   ERVV-2 [ SEEK ]   ERVV-2 [ MEM ]
Gene Expression Viewer (FireBrowse)ERVV-2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100271846
GTEX Portal (Tissue expression)ERVV-2
Protein : pattern, domain, 3D structure
UniProt/SwissProtB6SEH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB6SEH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB6SEH9
Splice isoforms : SwissVarB6SEH9
PhosPhoSitePlusB6SEH9
Domains : Interpro (EBI)TLV/ENV_coat_polyprotein   
Domain families : Pfam (Sanger)TLV_coat (PF00429)   
Domain families : Pfam (NCBI)pfam00429   
Conserved Domain (NCBI)ERVV-2
DMDM Disease mutations100271846
Blocks (Seattle)ERVV-2
SuperfamilyB6SEH9
Human Protein AtlasENSG00000268964
Peptide AtlasB6SEH9
IPIIPI00915295   
Protein Interaction databases
DIP (DOE-UCLA)B6SEH9
IntAct (EBI)B6SEH9
FunCoupENSG00000268964
BioGRIDERVV-2
STRING (EMBL)ERVV-2
ZODIACERVV-2
Ontologies - Pathways
QuickGOB6SEH9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkERVV-2
Atlas of Cancer Signalling NetworkERVV-2
Wikipedia pathwaysERVV-2
Orthology - Evolution
OrthoDB100271846
GeneTree (enSembl)ENSG00000268964
Phylogenetic Trees/Animal Genes : TreeFamERVV-2
HOVERGENB6SEH9
HOGENOMB6SEH9
Homologs : HomoloGeneERVV-2
Homology/Alignments : Family Browser (UCSC)ERVV-2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERVV-2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERVV-2
dbVarERVV-2
ClinVarERVV-2
1000_GenomesERVV-2 
Exome Variant ServerERVV-2
ExAC (Exome Aggregation Consortium)ERVV-2 (select the gene name)
Genetic variants : HAPMAP100271846
Genomic Variants (DGV)ERVV-2 [DGVbeta]
DECIPHERERVV-2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERVV-2 
Mutations
ICGC Data PortalERVV-2 
TCGA Data PortalERVV-2 
Broad Tumor PortalERVV-2
OASIS PortalERVV-2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICERVV-2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDERVV-2
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch ERVV-2
DgiDB (Drug Gene Interaction Database)ERVV-2
DoCM (Curated mutations)ERVV-2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERVV-2 (select a term)
intoGenERVV-2
Cancer3DERVV-2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenERVV-2
Genetic Testing Registry ERVV-2
NextProtB6SEH9 [Medical]
TSGene100271846
GENETestsERVV-2
Target ValidationERVV-2
Huge Navigator ERVV-2 [HugePedia]
snp3D : Map Gene to Disease100271846
BioCentury BCIQERVV-2
ClinGenERVV-2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100271846
Clinical trialERVV-2
Miscellaneous
canSAR (ICR)ERVV-2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERVV-2
EVEXERVV-2
GoPubMedERVV-2
iHOPERVV-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:07:21 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.