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ESAM (endothelial cell adhesion molecule)

Identity

Alias_symbol (synonym)W117m
Other alias
HGNC (Hugo) ESAM
LocusID (NCBI) 90952
Atlas_Id 51830
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124753123 and ends at 124762327 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ESAM   17474
Cards
Entrez_Gene (NCBI)ESAM  90952  endothelial cell adhesion molecule
AliasesW117m
GeneCards (Weizmann)ESAM
Ensembl hg19 (Hinxton)ENSG00000149564 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149564 [Gene_View]  chr11:124753123-124762327 [Contig_View]  ESAM [Vega]
ICGC DataPortalENSG00000149564
TCGA cBioPortalESAM
AceView (NCBI)ESAM
Genatlas (Paris)ESAM
WikiGenes90952
SOURCE (Princeton)ESAM
Genetics Home Reference (NIH)ESAM
Genomic and cartography
GoldenPath hg38 (UCSC)ESAM  -     chr11:124753123-124762327 -  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ESAM  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblESAM - 11q24.2 [CytoView hg19]  ESAM - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIESAM [Mapview hg19]  ESAM [Mapview hg38]
OMIM614281   
Gene and transcription
Genbank (Entrez)AF277292 AF361746 AK075396 AK091023 AK092429
RefSeq transcript (Entrez)NM_138961
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ESAM
Cluster EST : UnigeneHs.173840 [ NCBI ]
CGAP (NCI)Hs.173840
Alternative Splicing GalleryENSG00000149564
Gene ExpressionESAM [ NCBI-GEO ]   ESAM [ EBI - ARRAY_EXPRESS ]   ESAM [ SEEK ]   ESAM [ MEM ]
Gene Expression Viewer (FireBrowse)ESAM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90952
GTEX Portal (Tissue expression)ESAM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AP7
Splice isoforms : SwissVarQ96AP7
PhosPhoSitePlusQ96AP7
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_sub2    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)ESAM
DMDM Disease mutations90952
Blocks (Seattle)ESAM
SuperfamilyQ96AP7
Human Protein AtlasENSG00000149564
Peptide AtlasQ96AP7
HPRD13280
IPIIPI00303161   IPI00427491   IPI00816635   IPI00892879   IPI00892952   IPI00892590   
Protein Interaction databases
DIP (DOE-UCLA)Q96AP7
IntAct (EBI)Q96AP7
FunCoupENSG00000149564
BioGRIDESAM
STRING (EMBL)ESAM
ZODIACESAM
Ontologies - Pathways
QuickGOQ96AP7
Ontology : AmiGOplasma membrane  adherens junction  bicellular tight junction  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  single organismal cell-cell adhesion  leukocyte migration  extracellular exosome  
Ontology : EGO-EBIplasma membrane  adherens junction  bicellular tight junction  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  single organismal cell-cell adhesion  leukocyte migration  extracellular exosome  
Pathways : KEGGCell adhesion molecules (CAMs)    Leukocyte transendothelial migration   
NDEx NetworkESAM
Atlas of Cancer Signalling NetworkESAM
Wikipedia pathwaysESAM
Orthology - Evolution
OrthoDB90952
GeneTree (enSembl)ENSG00000149564
Phylogenetic Trees/Animal Genes : TreeFamESAM
HOVERGENQ96AP7
HOGENOMQ96AP7
Homologs : HomoloGeneESAM
Homology/Alignments : Family Browser (UCSC)ESAM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerESAM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ESAM
dbVarESAM
ClinVarESAM
1000_GenomesESAM 
Exome Variant ServerESAM
ExAC (Exome Aggregation Consortium)ESAM (select the gene name)
Genetic variants : HAPMAP90952
Genomic Variants (DGV)ESAM [DGVbeta]
DECIPHERESAM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisESAM 
Mutations
ICGC Data PortalESAM 
TCGA Data PortalESAM 
Broad Tumor PortalESAM
OASIS PortalESAM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICESAM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDESAM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ESAM
DgiDB (Drug Gene Interaction Database)ESAM
DoCM (Curated mutations)ESAM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ESAM (select a term)
intoGenESAM
Cancer3DESAM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614281   
Orphanet
MedgenESAM
Genetic Testing Registry ESAM
NextProtQ96AP7 [Medical]
TSGene90952
GENETestsESAM
Target ValidationESAM
Huge Navigator ESAM [HugePedia]
snp3D : Map Gene to Disease90952
BioCentury BCIQESAM
ClinGenESAM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90952
Chemical/Pharm GKB GenePA134954912
Clinical trialESAM
Miscellaneous
canSAR (ICR)ESAM (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineESAM
EVEXESAM
GoPubMedESAM
iHOPESAM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:07:17 CEST 2017

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