Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ESCO2 (establishment of sister chromatid cohesion N-acetyltransferase 2)

Identity

Other names2410004I17Rik
EFO2
RBS
HGNC (Hugo) ESCO2
LocusID (NCBI) 157570
Location 8p21.1
Location_base_pair Starts at 27632058 and ends at 27662424 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ESCO2   27230
Cards
Entrez_Gene (NCBI)ESCO2  157570  establishment of sister chromatid cohesion N-acetyltransferase 2
GeneCards (Weizmann)ESCO2
Ensembl (Hinxton)ENSG00000171320 [Gene_View]  chr8:27632058-27662424 [Contig_View]  ESCO2 [Vega]
ICGC DataPortalENSG00000171320
AceView (NCBI)ESCO2
Genatlas (Paris)ESCO2
WikiGenes157570
SOURCE (Princeton)NM_001017420
Genomic and cartography
GoldenPath (UCSC)ESCO2  -  8p21.1   chr8:27632058-27662424 +  8p21.1   [Description]    (hg19-Feb_2009)
EnsemblESCO2 - 8p21.1 [CytoView]
Mapping of homologs : NCBIESCO2 [Mapview]
OMIM609353   
Gene and transcription
Genbank (Entrez)AF306675 AF306676 AF306677 AF306678 AF306679
RefSeq transcript (Entrez)NM_001017420
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NG_008117 NT_167187 NW_001839127 NW_004929337
Consensus coding sequences : CCDS (NCBI)ESCO2
Cluster EST : UnigeneHs.99480 [ NCBI ]
CGAP (NCI)Hs.99480
Alternative Splicing : Fast-db (Paris)GSHG0028910
Alternative Splicing GalleryENSG00000171320
Gene ExpressionESCO2 [ NCBI-GEO ]     ESCO2 [ SEEK ]   ESCO2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ56NI9 (Uniprot)
NextProtQ56NI9  [Medical]
With graphics : InterProQ56NI9
Splice isoforms : SwissVarQ56NI9 (Swissvar)
Catalytic activity : Enzyme2.3.1.- [ Enzyme-Expasy ]   2.3.1.-2.3.1.- [ IntEnz-EBI ]   2.3.1.- [ BRENDA ]   2.3.1.- [ KEGG ]   
Domains : Interpro (EBI)AcTrfase_ESCO_Znf_dom    ESCO_Acetyltransf_dom   
Related proteins : CluSTrQ56NI9
Domain families : Pfam (Sanger)Acetyltransf_13 (PF13880)    zf-C2H2_3 (PF13878)   
Domain families : Pfam (NCBI)pfam13880    pfam13878   
DMDM Disease mutations157570
Blocks (Seattle)Q56NI9
Human Protein AtlasENSG00000171320
Peptide AtlasQ56NI9
HPRD18564
IPIIPI00087498   IPI00793432   IPI00984412   IPI00977473   IPI01014035   IPI00975661   IPI00978385   
Protein Interaction databases
DIP (DOE-UCLA)Q56NI9
IntAct (EBI)Q56NI9
FunCoupENSG00000171320
BioGRIDESCO2
InParanoidQ56NI9
Interologous Interaction database Q56NI9
IntegromeDBESCO2
STRING (EMBL)ESCO2
Ontologies - Pathways
Ontology : AmiGOmitotic cell cycle  chromatin  nucleus  nucleoplasm  Golgi apparatus  regulation of DNA replication  transferase activity, transferring acyl groups  post-translational protein acetylation  metal ion binding  
Ontology : EGO-EBImitotic cell cycle  chromatin  nucleus  nucleoplasm  Golgi apparatus  regulation of DNA replication  transferase activity, transferring acyl groups  post-translational protein acetylation  metal ion binding  
Protein Interaction DatabaseESCO2
Wikipedia pathwaysESCO2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ESCO2
SNP (GeneSNP Utah)ESCO2
SNP : HGBaseESCO2
Genetic variants : HAPMAPESCO2
1000_GenomesESCO2 
ICGC programENSG00000171320 
CONAN: Copy Number AnalysisESCO2 
Somatic Mutations in Cancer : COSMICESCO2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
Mutations and Diseases : HGMDESCO2
OMIM609353   
MedgenESCO2
GENETestsESCO2
Disease Genetic AssociationESCO2
Huge Navigator ESCO2 [HugePedia]  ESCO2 [HugeCancerGEM]
Genomic VariantsESCO2  ESCO2 [DGVbeta]
Exome VariantESCO2
dbVarESCO2
ClinVarESCO2
snp3D : Map Gene to Disease157570
General knowledge
Homologs : HomoloGeneESCO2
Homology/Alignments : Family Browser (UCSC)ESCO2
Phylogenetic Trees/Animal Genes : TreeFamESCO2
Chemical/Protein Interactions : CTD157570
Chemical/Pharm GKB GenePA134891970
Clinical trialESCO2
Cancer Resource (Charite)ENSG00000171320
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
CoreMineESCO2
iHOPESCO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:45:10 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.