Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ESM1 (endothelial cell specific molecule 1)

Identity

Alias_namesendothelial cell-specific molecule 1
Other aliasendocan
HGNC (Hugo) ESM1
LocusID (NCBI) 11082
Atlas_Id 46383
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 54977867 and ends at 54985586 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ESM1   3466
Cards
Entrez_Gene (NCBI)ESM1  11082  endothelial cell specific molecule 1
Aliasesendocan
GeneCards (Weizmann)ESM1
Ensembl hg19 (Hinxton)ENSG00000164283 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164283 [Gene_View]  chr5:54977867-54985586 [Contig_View]  ESM1 [Vega]
ICGC DataPortalENSG00000164283
TCGA cBioPortalESM1
AceView (NCBI)ESM1
Genatlas (Paris)ESM1
WikiGenes11082
SOURCE (Princeton)ESM1
Genetics Home Reference (NIH)ESM1
Genomic and cartography
GoldenPath hg38 (UCSC)ESM1  -     chr5:54977867-54985586 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ESM1  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblESM1 - 5q11.2 [CytoView hg19]  ESM1 - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBIESM1 [Mapview hg19]  ESM1 [Mapview hg38]
OMIM601521   
Gene and transcription
Genbank (Entrez)AJ973643 AK300634 AK311817 BC011989 BM423977
RefSeq transcript (Entrez)NM_001135604 NM_007036
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ESM1
Cluster EST : UnigeneHs.129944 [ NCBI ]
CGAP (NCI)Hs.129944
Alternative Splicing GalleryENSG00000164283
Gene ExpressionESM1 [ NCBI-GEO ]   ESM1 [ EBI - ARRAY_EXPRESS ]   ESM1 [ SEEK ]   ESM1 [ MEM ]
Gene Expression Viewer (FireBrowse)ESM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11082
GTEX Portal (Tissue expression)ESM1
Human Protein AtlasENSG00000164283-ESM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ30
Splice isoforms : SwissVarQ9NQ30
PhosPhoSitePlusQ9NQ30
Domaine pattern : Prosite (Expaxy)IGFBP_N_2 (PS51323)   
Domains : Interpro (EBI)Growth_fac_rcpt_    IGFBP-like   
Domain families : Pfam (Sanger)IGFBP (PF00219)   
Domain families : Pfam (NCBI)pfam00219   
Domain families : Smart (EMBL)IB (SM00121)  
Conserved Domain (NCBI)ESM1
DMDM Disease mutations11082
Blocks (Seattle)ESM1
SuperfamilyQ9NQ30
Human Protein Atlas [tissue]ENSG00000164283-ESM1 [tissue]
Peptide AtlasQ9NQ30
HPRD03310
IPIIPI00015186   IPI00651761   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ30
IntAct (EBI)Q9NQ30
FunCoupENSG00000164283
BioGRIDESM1
STRING (EMBL)ESM1
ZODIACESM1
Ontologies - Pathways
QuickGOQ9NQ30
Ontology : AmiGOangiogenesis  regulation of cell growth  sprouting angiogenesis  hepatocyte growth factor receptor binding  integrin binding  insulin-like growth factor binding  extracellular region  positive regulation of cell proliferation  positive regulation of hepatocyte growth factor receptor signaling pathway  
Ontology : EGO-EBIangiogenesis  regulation of cell growth  sprouting angiogenesis  hepatocyte growth factor receptor binding  integrin binding  insulin-like growth factor binding  extracellular region  positive regulation of cell proliferation  positive regulation of hepatocyte growth factor receptor signaling pathway  
NDEx NetworkESM1
Atlas of Cancer Signalling NetworkESM1
Wikipedia pathwaysESM1
Orthology - Evolution
OrthoDB11082
GeneTree (enSembl)ENSG00000164283
Phylogenetic Trees/Animal Genes : TreeFamESM1
HOVERGENQ9NQ30
HOGENOMQ9NQ30
Homologs : HomoloGeneESM1
Homology/Alignments : Family Browser (UCSC)ESM1
Gene fusions - Rearrangements
Tumor Fusion PortalESM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerESM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ESM1
dbVarESM1
ClinVarESM1
1000_GenomesESM1 
Exome Variant ServerESM1
ExAC (Exome Aggregation Consortium)ENSG00000164283
GNOMAD BrowserENSG00000164283
Genetic variants : HAPMAP11082
Genomic Variants (DGV)ESM1 [DGVbeta]
DECIPHERESM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisESM1 
Mutations
ICGC Data PortalESM1 
TCGA Data PortalESM1 
Broad Tumor PortalESM1
OASIS PortalESM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICESM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDESM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ESM1
DgiDB (Drug Gene Interaction Database)ESM1
DoCM (Curated mutations)ESM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ESM1 (select a term)
intoGenESM1
Cancer3DESM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601521   
Orphanet
DisGeNETESM1
MedgenESM1
Genetic Testing Registry ESM1
NextProtQ9NQ30 [Medical]
TSGene11082
GENETestsESM1
Target ValidationESM1
Huge Navigator ESM1 [HugePedia]
snp3D : Map Gene to Disease11082
BioCentury BCIQESM1
ClinGenESM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11082
Chemical/Pharm GKB GenePA27883
Clinical trialESM1
Miscellaneous
canSAR (ICR)ESM1 (select the gene name)
Probes
Litterature
PubMed68 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineESM1
EVEXESM1
GoPubMedESM1
iHOPESM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:12:20 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.