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ESRP1 (epithelial splicing regulatory protein 1)

Identity

Other namesRBM35A
RMB35A
HGNC (Hugo) ESRP1
LocusID (NCBI) 54845
Location 8q22.1
Location_base_pair Starts at 95653364 and ends at 95719694 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ESRP1   25966
Entrez_Gene (NCBI)ESRP1  54845  epithelial splicing regulatory protein 1
Cards
GeneCards (Weizmann)ESRP1
Ensembl (Hinxton)ENSG00000104413 [Gene_View]  chr8:95653364-95719694 [Contig_View]  ESRP1 [Vega]
AceView (NCBI)ESRP1
Genatlas (Paris)ESRP1
SOURCE (Stanford)NM_001034915 NM_001122825 NM_001122826 NM_001122827 NM_017697
Genomic and cartography
GoldenPath (UCSC)ESRP1  -  8q22.1   chr8:95653364-95719694 +  8q22.1   [Description]    (hg19-Feb_2009)
EnsemblESRP1 - 8q22.1 [CytoView]
Mapping of homologs : NCBIESRP1 [Mapview]
OMIM612959   
Gene and transcription
Genbank (Entrez)AI990751 AK000178 AK001805 BC019932 BC035406
RefSeq transcript (SRS)NM_001034915 NM_001122825 NM_001122826 NM_001122827 NM_017697
RefSeq transcript (Entrez)NM_001034915 NM_001122825 NM_001122826 NM_001122827 NM_017697
RefSeq genomic (SRS)AC_000140 NC_000008 NC_018919 NT_008046 NW_001839136 NW_004078037
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NT_008046 NW_001839136 NW_004078037
Consensus coding sequences : CCDS (NCBI)ESRP1
Cluster EST : UnigeneHs.487471 [ SRS ] Hs.487471 [ NCBI ]
CGAP (NCI)Hs.487471
Alternative Splicing : Fast-db (Paris)GSHG0029146
Alternative Splicing GalleryENSG00000104413
Gene ExpressionESRP1 [ NCBI-GEO ]   ESRP1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NXG1 (SRS) Q6NXG1 (Uniprot)
NextProtQ6NXG1
With graphics : InterProQ6NXG1
Splice isoforms : SwissVarQ6NXG1(Swissvar)
Domaine pattern : Prosite (SRS)RRM (PS50102)   
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (SRS)Nucleotide-bd_a/b_plait    RNaseH-like_dom    RRM_dom   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RNaseH-like_dom    RRM_dom   
Related proteins : CluSTrQ6NXG1
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RRM (SM00360)  
DMDM54845
Blocks (Seattle)Q6NXG1
PDB (SRS)2DHA   
PDB (PDBSum)2DHA   
PDB (IMB)2DHA   
PDB (RSDB)2DHA   
Human Protein AtlasENSG00000104413
HPRD07881
IPIIPI00797684   IPI00789651   IPI00184262   IPI00654821   IPI00889667   IPI00889741   IPI00981964   IPI00981412   
Protein Interaction databases
DIP (DOE-UCLA)Q6NXG1
IntAct (EBI)Q6NXG1
FunCoupENSG00000104413
REACTOMEESRP1
Protein Interaction Database54845
BioGRIDESRP1
InParanoidQ6NXG1
Interologous Interaction database Q6NXG1
IntegromeDBESRP1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ESRP1
SNP (GeneSNP Utah)ESRP1
SNP : HGBaseESRP1
Genetic variants : HAPMAPESRP1
Somatic Mutations in Cancer : COSMICESRP1 
CONAN: Copy Number AnalysisESRP1 
Rearrangement : COSMICESRP1 [8q22.1]  -  RAF1 [3p25.2]
Rearrangement : COSMICRAF1 [3p25.2]  -  ESRP1 [8q22.1]
Translocation Breakpoints in Cancer : TICdbESRP1 
Mutations and Diseases : HGMDESRP1
OMIM612959   
GENETests612959   
Disease Genetic AssociationESRP1
Huge Navigator ESRP1 [HugePedia]  ESRP1 [HugeCancerGEM]
Genomic VariantsESRP1  ESRP1 [DGVbeta]
snp3D : Map Gene to Disease54845
General knowledge
Homologs : HomoloGeneESRP1
Homology/Alignments : Family Browser (UCSC)ESRP1
Phylogenetic Trees/Animal Genes : TreeFamESRP1
Chemical/Protein Interactions : CTD54845
Chemical/Pharm GKB GenePA164719324
Clinical trialESRP1
Cancer Resource (Charite)ENSG00000104413
Ontology : AmiGOnucleotide binding  mRNA binding  nucleus  nucleolus  plasma membrane  mRNA processing  RNA splicing  regulation of RNA splicing  
Ontology : EGO-EBInucleotide binding  mRNA binding  nucleus  nucleolus  plasma membrane  mRNA processing  RNA splicing  regulation of RNA splicing  
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
PubGeneESRP1
iHOPESRP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:33:39 CEST 2013
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