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ESRP2 (epithelial splicing regulatory protein 2)

Identity

Alias_namesRBM35B
RNA binding motif protein 35B
Alias_symbol (synonym)FLJ21918
Other alias
HGNC (Hugo) ESRP2
LocusID (NCBI) 80004
Atlas_Id 55032
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 68228547 and ends at 68236233 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ALAD (9q32) / ESRP2 (16q22.1)ESRP2 (16q22.1) / SLC7A6 (16q22.1)SCARB2 (4q21.1) / ESRP2 (16q22.1)
ESRP2 16q22.1 / SLC7A6 16q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ESRP2   26152
Cards
Entrez_Gene (NCBI)ESRP2  80004  epithelial splicing regulatory protein 2
AliasesRBM35B
GeneCards (Weizmann)ESRP2
Ensembl hg19 (Hinxton)ENSG00000103067 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103067 [Gene_View]  chr16:68228547-68236233 [Contig_View]  ESRP2 [Vega]
ICGC DataPortalENSG00000103067
TCGA cBioPortalESRP2
AceView (NCBI)ESRP2
Genatlas (Paris)ESRP2
WikiGenes80004
SOURCE (Princeton)ESRP2
Genetics Home Reference (NIH)ESRP2
Genomic and cartography
GoldenPath hg38 (UCSC)ESRP2  -     chr16:68228547-68236233 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ESRP2  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblESRP2 - 16q22.1 [CytoView hg19]  ESRP2 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIESRP2 [Mapview hg19]  ESRP2 [Mapview hg38]
OMIM612960   
Gene and transcription
Genbank (Entrez)AF289577 AK025571 AK025901 BC030146 BC052309
RefSeq transcript (Entrez)NM_024939
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ESRP2
Cluster EST : UnigeneHs.592053 [ NCBI ]
CGAP (NCI)Hs.592053
Alternative Splicing GalleryENSG00000103067
Gene ExpressionESRP2 [ NCBI-GEO ]   ESRP2 [ EBI - ARRAY_EXPRESS ]   ESRP2 [ SEEK ]   ESRP2 [ MEM ]
Gene Expression Viewer (FireBrowse)ESRP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80004
GTEX Portal (Tissue expression)ESRP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6T0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6T0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6T0
Splice isoforms : SwissVarQ9H6T0
PhosPhoSitePlusQ9H6T0
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RNaseH-like_dom    RRM_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)ESRP2
DMDM Disease mutations80004
Blocks (Seattle)ESRP2
SuperfamilyQ9H6T0
Human Protein AtlasENSG00000103067
Peptide AtlasQ9H6T0
HPRD07971
IPIIPI00827597   IPI00034099   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6T0
IntAct (EBI)Q9H6T0
FunCoupENSG00000103067
BioGRIDESRP2
STRING (EMBL)ESRP2
ZODIACESRP2
Ontologies - Pathways
QuickGOQ9H6T0
Ontology : AmiGOalternative mRNA splicing, via spliceosome  RNA binding  mRNA binding  nucleus  nucleoplasm  nucleoplasm  fibroblast growth factor receptor signaling pathway  regulation of RNA splicing  positive regulation of epithelial cell proliferation  epithelial tube branching involved in lung morphogenesis  branching involved in salivary gland morphogenesis  
Ontology : EGO-EBIalternative mRNA splicing, via spliceosome  RNA binding  mRNA binding  nucleus  nucleoplasm  nucleoplasm  fibroblast growth factor receptor signaling pathway  regulation of RNA splicing  positive regulation of epithelial cell proliferation  epithelial tube branching involved in lung morphogenesis  branching involved in salivary gland morphogenesis  
NDEx NetworkESRP2
Atlas of Cancer Signalling NetworkESRP2
Wikipedia pathwaysESRP2
Orthology - Evolution
OrthoDB80004
GeneTree (enSembl)ENSG00000103067
Phylogenetic Trees/Animal Genes : TreeFamESRP2
HOVERGENQ9H6T0
HOGENOMQ9H6T0
Homologs : HomoloGeneESRP2
Homology/Alignments : Family Browser (UCSC)ESRP2
Gene fusions - Rearrangements
Fusion : MitelmanESRP2/SLC7A6 [16q22.1/16q22.1]  
Fusion: TCGAESRP2 16q22.1 SLC7A6 16q22.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerESRP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ESRP2
dbVarESRP2
ClinVarESRP2
1000_GenomesESRP2 
Exome Variant ServerESRP2
ExAC (Exome Aggregation Consortium)ESRP2 (select the gene name)
Genetic variants : HAPMAP80004
Genomic Variants (DGV)ESRP2 [DGVbeta]
DECIPHERESRP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisESRP2 
Mutations
ICGC Data PortalESRP2 
TCGA Data PortalESRP2 
Broad Tumor PortalESRP2
OASIS PortalESRP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICESRP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDESRP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ESRP2
DgiDB (Drug Gene Interaction Database)ESRP2
DoCM (Curated mutations)ESRP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ESRP2 (select a term)
intoGenESRP2
Cancer3DESRP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612960   
Orphanet
MedgenESRP2
Genetic Testing Registry ESRP2
NextProtQ9H6T0 [Medical]
TSGene80004
GENETestsESRP2
Target ValidationESRP2
Huge Navigator ESRP2 [HugePedia]
snp3D : Map Gene to Disease80004
BioCentury BCIQESRP2
ClinGenESRP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80004
Chemical/Pharm GKB GenePA164719361
Clinical trialESRP2
Miscellaneous
canSAR (ICR)ESRP2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineESRP2
EVEXESRP2
GoPubMedESRP2
iHOPESRP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:00:39 CEST 2017

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