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ESYT3 (extended synaptotagmin-like protein 3)

Identity

Alias_namesFAM62C
family with sequence similarity 62 (C2 domain containing), member C
extended synaptotagmin-like protein 3
Alias_symbol (synonym)CHR3SYT
Other aliasE-Syt3
HGNC (Hugo) ESYT3
LocusID (NCBI) 83850
Atlas_Id 62926
Location 3q22.3  [Link to chromosome band 3q22]
Location_base_pair Starts at 138153415 and ends at 138197256 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ESYT3   24295
Cards
Entrez_Gene (NCBI)ESYT3  83850  extended synaptotagmin-like protein 3
AliasesCHR3SYT; E-Syt3; FAM62C
GeneCards (Weizmann)ESYT3
Ensembl hg19 (Hinxton)ENSG00000158220 [Gene_View]  chr3:138153415-138197256 [Contig_View]  ESYT3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000158220 [Gene_View]  chr3:138153415-138197256 [Contig_View]  ESYT3 [Vega]
ICGC DataPortalENSG00000158220
TCGA cBioPortalESYT3
AceView (NCBI)ESYT3
Genatlas (Paris)ESYT3
WikiGenes83850
SOURCE (Princeton)ESYT3
Genetics Home Reference (NIH)ESYT3
Genomic and cartography
GoldenPath hg19 (UCSC)ESYT3  -     chr3:138153415-138197256 +  3q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ESYT3  -     3q22.3   [Description]    (hg38-Dec_2013)
EnsemblESYT3 - 3q22.3 [CytoView hg19]  ESYT3 - 3q22.3 [CytoView hg38]
Mapping of homologs : NCBIESYT3 [Mapview hg19]  ESYT3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ303366 AJ697972 AK125080 AK289530 AW513592
RefSeq transcript (Entrez)NM_031913
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)ESYT3
Cluster EST : UnigeneHs.477711 [ NCBI ]
CGAP (NCI)Hs.477711
Alternative Splicing GalleryENSG00000158220
Gene ExpressionESYT3 [ NCBI-GEO ]   ESYT3 [ EBI - ARRAY_EXPRESS ]   ESYT3 [ SEEK ]   ESYT3 [ MEM ]
Gene Expression Viewer (FireBrowse)ESYT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83850
GTEX Portal (Tissue expression)ESYT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0FGR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0FGR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0FGR9
Splice isoforms : SwissVarA0FGR9
PhosPhoSitePlusA0FGR9
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom   
Domain families : Pfam (Sanger)C2 (PF00168)   
Domain families : Pfam (NCBI)pfam00168   
Domain families : Smart (EMBL)C2 (SM00239)  
Conserved Domain (NCBI)ESYT3
DMDM Disease mutations83850
Blocks (Seattle)ESYT3
SuperfamilyA0FGR9
Human Protein AtlasENSG00000158220
Peptide AtlasA0FGR9
HPRD13054
IPIIPI00646453   IPI00784300   IPI01011105   
Protein Interaction databases
DIP (DOE-UCLA)A0FGR9
IntAct (EBI)A0FGR9
FunCoupENSG00000158220
BioGRIDESYT3
STRING (EMBL)ESYT3
ZODIACESYT3
Ontologies - Pathways
QuickGOA0FGR9
Ontology : AmiGOprotein binding  phospholipid binding  endoplasmic reticulum  integral component of plasma membrane  lipid transport  intrinsic component of endoplasmic reticulum membrane  extrinsic component of cytoplasmic side of plasma membrane  organelle membrane contact site  metal ion binding  
Ontology : EGO-EBIprotein binding  phospholipid binding  endoplasmic reticulum  integral component of plasma membrane  lipid transport  intrinsic component of endoplasmic reticulum membrane  extrinsic component of cytoplasmic side of plasma membrane  organelle membrane contact site  metal ion binding  
NDEx NetworkESYT3
Atlas of Cancer Signalling NetworkESYT3
Wikipedia pathwaysESYT3
Orthology - Evolution
OrthoDB83850
GeneTree (enSembl)ENSG00000158220
Phylogenetic Trees/Animal Genes : TreeFamESYT3
HOVERGENA0FGR9
HOGENOMA0FGR9
Homologs : HomoloGeneESYT3
Homology/Alignments : Family Browser (UCSC)ESYT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerESYT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ESYT3
dbVarESYT3
ClinVarESYT3
1000_GenomesESYT3 
Exome Variant ServerESYT3
ExAC (Exome Aggregation Consortium)ESYT3 (select the gene name)
Genetic variants : HAPMAP83850
Genomic Variants (DGV)ESYT3 [DGVbeta]
DECIPHER (Syndromes)3:138153415-138197256  ENSG00000158220
CONAN: Copy Number AnalysisESYT3 
Mutations
ICGC Data PortalESYT3 
TCGA Data PortalESYT3 
Broad Tumor PortalESYT3
OASIS PortalESYT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICESYT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDESYT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ESYT3
DgiDB (Drug Gene Interaction Database)ESYT3
DoCM (Curated mutations)ESYT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ESYT3 (select a term)
intoGenESYT3
Cancer3DESYT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenESYT3
Genetic Testing Registry ESYT3
NextProtA0FGR9 [Medical]
TSGene83850
GENETestsESYT3
Huge Navigator ESYT3 [HugePedia]
snp3D : Map Gene to Disease83850
BioCentury BCIQESYT3
ClinGenESYT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83850
Chemical/Pharm GKB GenePA165697118
Clinical trialESYT3
Miscellaneous
canSAR (ICR)ESYT3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineESYT3
EVEXESYT3
GoPubMedESYT3
iHOPESYT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:11 CET 2017

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