Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ETAA1 (Ewing tumor-associated antigen 1)

Identity

Alias_namesEwing's tumor-associated antigen 1
Alias_symbol (synonym)ETAA16
Other alias
HGNC (Hugo) ETAA1
LocusID (NCBI) 54465
Atlas_Id 45775
Location 2p14  [Link to chromosome band 2p14]
Location_base_pair Starts at 67624442 and ends at 67637533 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ETAA1   24648
Cards
Entrez_Gene (NCBI)ETAA1  54465  Ewing tumor-associated antigen 1
AliasesETAA16
GeneCards (Weizmann)ETAA1
Ensembl hg19 (Hinxton)ENSG00000143971 [Gene_View]  chr2:67624442-67637533 [Contig_View]  ETAA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143971 [Gene_View]  chr2:67624442-67637533 [Contig_View]  ETAA1 [Vega]
ICGC DataPortalENSG00000143971
TCGA cBioPortalETAA1
AceView (NCBI)ETAA1
Genatlas (Paris)ETAA1
WikiGenes54465
SOURCE (Princeton)ETAA1
Genetics Home Reference (NIH)ETAA1
Genomic and cartography
GoldenPath hg19 (UCSC)ETAA1  -     chr2:67624442-67637533 +  2p14   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ETAA1  -     2p14   [Description]    (hg38-Dec_2013)
EnsemblETAA1 - 2p14 [CytoView hg19]  ETAA1 - 2p14 [CytoView hg38]
Mapping of homologs : NCBIETAA1 [Mapview hg19]  ETAA1 [Mapview hg38]
OMIM613196   
Gene and transcription
Genbank (Entrez)AJ242682 AK025155 AK026300 AW978869 BC033075
RefSeq transcript (Entrez)NM_019002
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)ETAA1
Cluster EST : UnigeneHs.353022 [ NCBI ]
CGAP (NCI)Hs.353022
Alternative Splicing GalleryENSG00000143971
Gene ExpressionETAA1 [ NCBI-GEO ]   ETAA1 [ EBI - ARRAY_EXPRESS ]   ETAA1 [ SEEK ]   ETAA1 [ MEM ]
Gene Expression Viewer (FireBrowse)ETAA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54465
GTEX Portal (Tissue expression)ETAA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY74
Splice isoforms : SwissVarQ9NY74
PhosPhoSitePlusQ9NY74
Domains : Interpro (EBI)ETAA1   
Domain families : Pfam (Sanger)ETAA1 (PF15350)   
Domain families : Pfam (NCBI)pfam15350   
Conserved Domain (NCBI)ETAA1
DMDM Disease mutations54465
Blocks (Seattle)ETAA1
SuperfamilyQ9NY74
Human Protein AtlasENSG00000143971
Peptide AtlasQ9NY74
HPRD13282
IPIIPI00004521   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY74
IntAct (EBI)Q9NY74
FunCoupENSG00000143971
BioGRIDETAA1
STRING (EMBL)ETAA1
ZODIACETAA1
Ontologies - Pathways
QuickGOQ9NY74
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkETAA1
Atlas of Cancer Signalling NetworkETAA1
Wikipedia pathwaysETAA1
Orthology - Evolution
OrthoDB54465
GeneTree (enSembl)ENSG00000143971
Phylogenetic Trees/Animal Genes : TreeFamETAA1
HOVERGENQ9NY74
HOGENOMQ9NY74
Homologs : HomoloGeneETAA1
Homology/Alignments : Family Browser (UCSC)ETAA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerETAA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ETAA1
dbVarETAA1
ClinVarETAA1
1000_GenomesETAA1 
Exome Variant ServerETAA1
ExAC (Exome Aggregation Consortium)ETAA1 (select the gene name)
Genetic variants : HAPMAP54465
Genomic Variants (DGV)ETAA1 [DGVbeta]
DECIPHER (Syndromes)2:67624442-67637533  ENSG00000143971
CONAN: Copy Number AnalysisETAA1 
Mutations
ICGC Data PortalETAA1 
TCGA Data PortalETAA1 
Broad Tumor PortalETAA1
OASIS PortalETAA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICETAA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDETAA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ETAA1
DgiDB (Drug Gene Interaction Database)ETAA1
DoCM (Curated mutations)ETAA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ETAA1 (select a term)
intoGenETAA1
Cancer3DETAA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613196   
Orphanet
MedgenETAA1
Genetic Testing Registry ETAA1
NextProtQ9NY74 [Medical]
TSGene54465
GENETestsETAA1
Huge Navigator ETAA1 [HugePedia]
snp3D : Map Gene to Disease54465
BioCentury BCIQETAA1
ClinGenETAA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54465
Chemical/Pharm GKB GenePA162385444
Clinical trialETAA1
Miscellaneous
canSAR (ICR)ETAA1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineETAA1
EVEXETAA1
GoPubMedETAA1
iHOPETAA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:05:03 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.