Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ETF1 (eukaryotic translation termination factor 1)

Identity

Other namesD5S1995
ERF
ERF1
RF1
SUP45L1
TB3-1
HGNC (Hugo) ETF1
LocusID (NCBI) 2107
Location 5q31.2
Location_base_pair Starts at 137841782 and ends at 137878989 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ETF1   3477
Entrez_Gene (NCBI)ETF1  2107  eukaryotic translation termination factor 1
Cards
GeneCards (Weizmann)ETF1
Ensembl (Hinxton)ENSG00000120705 [Gene_View]  chr5:137841782-137878989 [Contig_View]  ETF1 [Vega]
AceView (NCBI)ETF1
Genatlas (Paris)ETF1
SOURCE (Stanford)NM_004730
Genomic and cartography
GoldenPath (UCSC)ETF1  -  5q31.2   chr5:137841782-137878989 -  5q31.2   [Description]    (hg19-Feb_2009)
EnsemblETF1 - 5q31.2 [CytoView]
Mapping of homologs : NCBIETF1 [Mapview]
OMIM600285   
Gene and transcription
Genbank (Entrez)AK302364 AK309875 AK312510 AL553004 AW131045
RefSeq transcript (SRS)NM_004730
RefSeq transcript (Entrez)NM_004730
RefSeq genomic (SRS)AC_000137 NC_000005 NC_018916 NT_034772 NW_001838952 NW_004078024
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NT_034772 NW_001838952 NW_004078024
Consensus coding sequences : CCDS (NCBI)ETF1
Cluster EST : UnigeneHs.483494 [ SRS ] Hs.483494 [ NCBI ]
CGAP (NCI)Hs.483494
Alternative Splicing : Fast-db (Paris)GSHG0025100
Alternative Splicing GalleryENSG00000120705
Gene ExpressionETF1 [ NCBI-GEO ]   ETF1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62495 (SRS) P62495 (Uniprot)
NextProtP62495
With graphics : InterProP62495
Splice isoforms : SwissVarP62495(Swissvar)
Domains : Interpro (SRS)eRF1_1_Pelota    eRF1_2    eRF1_3    Peptide_chain-rel_eRF1/aRF1    Release_factor_eRF1/aRF1_N   
Domains : Interpro (EBI)eRF1_1_Pelota    eRF1_2    eRF1_3    Peptide_chain-rel_eRF1/aRF1    Release_factor_eRF1/aRF1_N   
Related proteins : CluSTrP62495
Domain families : Pfam (SRS)eRF1_1 (PF03463)    eRF1_2 (PF03464)    eRF1_3 (PF03465)   
Domain families : Pfam (Sanger)eRF1_1 (PF03463)    eRF1_2 (PF03464)    eRF1_3 (PF03465)   
Domain families : Pfam (NCBI)pfam03463    pfam03464    pfam03465   
DMDM2107
Blocks (Seattle)P62495
PDB (SRS)1DT9    2HST    2KTU    2KTV    2LGT    2LLX    3E1Y   
PDB (PDBSum)1DT9    2HST    2KTU    2KTV    2LGT    2LLX    3E1Y   
PDB (IMB)1DT9    2HST    2KTU    2KTV    2LGT    2LLX    3E1Y   
PDB (RSDB)1DT9    2HST    2KTU    2KTV    2LGT    2LLX    3E1Y   
Human Protein AtlasENSG00000120705
HPRD02616
IPIIPI00429191   IPI00968296   IPI00967460   IPI00964335   IPI00967974   
Protein Interaction databases
DIP (DOE-UCLA)P62495
IntAct (EBI)P62495
FunCoupENSG00000120705
REACTOMEETF1
Protein Interaction Database2107
BioGRIDETF1
InParanoidP62495
Interologous Interaction database P62495
IntegromeDBETF1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ETF1
SNP (GeneSNP Utah)ETF1
SNP : HGBaseETF1
Genetic variants : HAPMAPETF1
Somatic Mutations in Cancer : COSMICETF1 
CONAN: Copy Number AnalysisETF1 
Mutations and Diseases : HGMDETF1
OMIM600285   
GENETests600285   
Disease Genetic AssociationETF1
Huge Navigator ETF1 [HugePedia]  ETF1 [HugeCancerGEM]
Genomic VariantsETF1  ETF1 [DGVbeta]
snp3D : Map Gene to Disease2107
General knowledge
Homologs : HomoloGeneETF1
Homology/Alignments : Family Browser (UCSC)ETF1
Phylogenetic Trees/Animal Genes : TreeFamETF1
Chemical/Protein Interactions : CTD2107
Chemical/Pharm GKB GenePA27893
Clinical trialETF1
Cancer Resource (Charite)ENSG00000120705
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  translation release factor activity  protein binding  cytoplasm  cytosol  translation  translational termination  regulation of translational termination  protein methylation  translation termination factor activity  gene expression  RNA metabolic process  mRNA metabolic process  translation release factor activity, codon specific  ribosome binding  cellular protein metabolic process  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  translation release factor activity  protein binding  cytoplasm  cytosol  translation  translational termination  regulation of translational termination  protein methylation  translation termination factor activity  gene expression  RNA metabolic process  mRNA metabolic process  translation release factor activity, codon specific  ribosome binding  cellular protein metabolic process  
Other databases
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
PubGeneETF1
iHOPETF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:21:19 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.