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ETFA (electron transfer flavoprotein alpha subunit)

Identity

Alias_nameselectron-transfer-flavoprotein
Alias_symbol (synonym)GA2
EMA
MADD
Other alias
HGNC (Hugo) ETFA
LocusID (NCBI) 2108
Atlas_Id 54291
Location 15q24.2  [Link to chromosome band 15q24]
Location_base_pair Starts at 76508629 and ends at 76603810 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ENOX1 (13q14.11) / ETFA (15q24.2)ETFA (15q24.2) / ETFA (15q24.2)ETFA (15q24.2) / HMG20A (15q24.3)
ETFA (15q24.2) / SCO1 (17p13.1)ETFA (15q24.2) / STRA6 (15q24.1)ETFA 15q24.2 / STRA6 15q24.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ETFA   3481
Cards
Entrez_Gene (NCBI)ETFA  2108  electron transfer flavoprotein alpha subunit
AliasesEMA; GA2; MADD
GeneCards (Weizmann)ETFA
Ensembl hg19 (Hinxton)ENSG00000140374 [Gene_View]  chr15:76508629-76603810 [Contig_View]  ETFA [Vega]
Ensembl hg38 (Hinxton)ENSG00000140374 [Gene_View]  chr15:76508629-76603810 [Contig_View]  ETFA [Vega]
ICGC DataPortalENSG00000140374
TCGA cBioPortalETFA
AceView (NCBI)ETFA
Genatlas (Paris)ETFA
WikiGenes2108
SOURCE (Princeton)ETFA
Genetics Home Reference (NIH)ETFA
Genomic and cartography
GoldenPath hg19 (UCSC)ETFA  -     chr15:76508629-76603810 -  15q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ETFA  -     15q24.2   [Description]    (hg38-Dec_2013)
EnsemblETFA - 15q24.2 [CytoView hg19]  ETFA - 15q24.2 [CytoView hg38]
Mapping of homologs : NCBIETFA [Mapview hg19]  ETFA [Mapview hg38]
OMIM231680   608053   
Gene and transcription
Genbank (Entrez)AA557337 AK292979 AK300044 BC015526 BC029995
RefSeq transcript (Entrez)NM_000126 NM_001127716
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_007077 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)ETFA
Cluster EST : UnigeneHs.39925 [ NCBI ]
CGAP (NCI)Hs.39925
Alternative Splicing GalleryENSG00000140374
Gene ExpressionETFA [ NCBI-GEO ]   ETFA [ EBI - ARRAY_EXPRESS ]   ETFA [ SEEK ]   ETFA [ MEM ]
Gene Expression Viewer (FireBrowse)ETFA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2108
GTEX Portal (Tissue expression)ETFA
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13804   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP13804  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP13804
Splice isoforms : SwissVarP13804
PhosPhoSitePlusP13804
Domaine pattern : Prosite (Expaxy)ETF_ALPHA (PS00696)   
Domains : Interpro (EBI)DHS-like_NAD/FAD-binding_dom    ETF_a    ETF_a/b_N    ETF_asu_C    ETF_asu_C_CS    Rossmann-like_a/b/a_fold   
Domain families : Pfam (Sanger)ETF (PF01012)    ETF_alpha (PF00766)   
Domain families : Pfam (NCBI)pfam01012    pfam00766   
Domain families : Smart (EMBL)ETF (SM00893)  
Conserved Domain (NCBI)ETFA
DMDM Disease mutations2108
Blocks (Seattle)ETFA
PDB (SRS)1EFV    1T9G    2A1T    2A1U   
PDB (PDBSum)1EFV    1T9G    2A1T    2A1U   
PDB (IMB)1EFV    1T9G    2A1T    2A1U   
PDB (RSDB)1EFV    1T9G    2A1T    2A1U   
Structural Biology KnowledgeBase1EFV    1T9G    2A1T    2A1U   
SCOP (Structural Classification of Proteins)1EFV    1T9G    2A1T    2A1U   
CATH (Classification of proteins structures)1EFV    1T9G    2A1T    2A1U   
SuperfamilyP13804
Human Protein AtlasENSG00000140374
Peptide AtlasP13804
HPRD01979
IPIIPI00010810   IPI00895865   
Protein Interaction databases
DIP (DOE-UCLA)P13804
IntAct (EBI)P13804
FunCoupENSG00000140374
BioGRIDETFA
STRING (EMBL)ETFA
ZODIACETFA
Ontologies - Pathways
QuickGOP13804
Ontology : AmiGOfatty-acyl-CoA binding  acyl-CoA dehydrogenase activity  mitochondrion  mitochondrial matrix  electron carrier activity  oxidoreductase activity  respiratory electron transport chain  fatty acid beta-oxidation using acyl-CoA dehydrogenase  flavin adenine dinucleotide binding  oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor  lipid homeostasis  extracellular exosome  
Ontology : EGO-EBIfatty-acyl-CoA binding  acyl-CoA dehydrogenase activity  mitochondrion  mitochondrial matrix  electron carrier activity  oxidoreductase activity  respiratory electron transport chain  fatty acid beta-oxidation using acyl-CoA dehydrogenase  flavin adenine dinucleotide binding  oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor  lipid homeostasis  extracellular exosome  
NDEx NetworkETFA
Atlas of Cancer Signalling NetworkETFA
Wikipedia pathwaysETFA
Orthology - Evolution
OrthoDB2108
GeneTree (enSembl)ENSG00000140374
Phylogenetic Trees/Animal Genes : TreeFamETFA
HOVERGENP13804
HOGENOMP13804
Homologs : HomoloGeneETFA
Homology/Alignments : Family Browser (UCSC)ETFA
Gene fusions - Rearrangements
Fusion : MitelmanENOX1/ETFA [13q14.11/15q24.2]  [t(13;15)(q14;q24)]  
Fusion : MitelmanETFA/STRA6 [15q24.2/15q24.1]  [t(15;15)(q24;q24)]  
Fusion: TCGAETFA 15q24.2 STRA6 15q24.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerETFA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ETFA
dbVarETFA
ClinVarETFA
1000_GenomesETFA 
Exome Variant ServerETFA
ExAC (Exome Aggregation Consortium)ETFA (select the gene name)
Genetic variants : HAPMAP2108
Genomic Variants (DGV)ETFA [DGVbeta]
DECIPHER (Syndromes)15:76508629-76603810  ENSG00000140374
CONAN: Copy Number AnalysisETFA 
Mutations
ICGC Data PortalETFA 
TCGA Data PortalETFA 
Broad Tumor PortalETFA
OASIS PortalETFA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICETFA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDETFA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ETFA
DgiDB (Drug Gene Interaction Database)ETFA
DoCM (Curated mutations)ETFA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ETFA (select a term)
intoGenETFA
Cancer3DETFA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM231680    608053   
Orphanet22660    22659   
MedgenETFA
Genetic Testing Registry ETFA
NextProtP13804 [Medical]
TSGene2108
GENETestsETFA
Huge Navigator ETFA [HugePedia]
snp3D : Map Gene to Disease2108
BioCentury BCIQETFA
ClinGenETFA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2108
Chemical/Pharm GKB GenePA27897
Clinical trialETFA
Miscellaneous
canSAR (ICR)ETFA (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineETFA
EVEXETFA
GoPubMedETFA
iHOPETFA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:00:24 CEST 2017

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