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ETFB (electron-transfer-flavoprotein, beta polypeptide)

Identity

Alias_nameselectron-transfer-flavoprotein, beta polypeptide
Other aliasFP585
MADD
HGNC (Hugo) ETFB
LocusID (NCBI) 2109
Atlas_Id 62927
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51848409 and ends at 51858096 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ETFB (19q13.41) / LIM2 (19q13.41)ZNF805 (19q13.43) / ETFB (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ETFB   3482
Cards
Entrez_Gene (NCBI)ETFB  2109  electron-transfer-flavoprotein, beta polypeptide
AliasesFP585; MADD
GeneCards (Weizmann)ETFB
Ensembl hg19 (Hinxton)ENSG00000105379 [Gene_View]  chr19:51848409-51858096 [Contig_View]  ETFB [Vega]
Ensembl hg38 (Hinxton)ENSG00000105379 [Gene_View]  chr19:51848409-51858096 [Contig_View]  ETFB [Vega]
ICGC DataPortalENSG00000105379
TCGA cBioPortalETFB
AceView (NCBI)ETFB
Genatlas (Paris)ETFB
WikiGenes2109
SOURCE (Princeton)ETFB
Genetics Home Reference (NIH)ETFB
Genomic and cartography
GoldenPath hg19 (UCSC)ETFB  -     chr19:51848409-51858096 -  19q13.41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ETFB  -     19q13.41   [Description]    (hg38-Dec_2013)
EnsemblETFB - 19q13.41 [CytoView hg19]  ETFB - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIETFB [Mapview hg19]  ETFB [Mapview hg38]
OMIM130410   231680   
Gene and transcription
Genbank (Entrez)AF370381 AK055285 AK128845 AK291881 AL833205
RefSeq transcript (Entrez)NM_001014763 NM_001985
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_007115 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ETFB
Cluster EST : UnigeneHs.348531 [ NCBI ]
CGAP (NCI)Hs.348531
Alternative Splicing GalleryENSG00000105379
Gene ExpressionETFB [ NCBI-GEO ]   ETFB [ EBI - ARRAY_EXPRESS ]   ETFB [ SEEK ]   ETFB [ MEM ]
Gene Expression Viewer (FireBrowse)ETFB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2109
GTEX Portal (Tissue expression)ETFB
Protein : pattern, domain, 3D structure
UniProt/SwissProtP38117   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP38117  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP38117
Splice isoforms : SwissVarP38117
PhosPhoSitePlusP38117
Domaine pattern : Prosite (Expaxy)ETF_BETA (PS01065)   
Domains : Interpro (EBI)ET-Flavoprotein_bsu_CS    ETF_a/b_N    ETF_b    Rossmann-like_a/b/a_fold   
Domain families : Pfam (Sanger)ETF (PF01012)   
Domain families : Pfam (NCBI)pfam01012   
Domain families : Smart (EMBL)ETF (SM00893)  
Conserved Domain (NCBI)ETFB
DMDM Disease mutations2109
Blocks (Seattle)ETFB
PDB (SRS)1EFV    1T9G    2A1T    2A1U   
PDB (PDBSum)1EFV    1T9G    2A1T    2A1U   
PDB (IMB)1EFV    1T9G    2A1T    2A1U   
PDB (RSDB)1EFV    1T9G    2A1T    2A1U   
Structural Biology KnowledgeBase1EFV    1T9G    2A1T    2A1U   
SCOP (Structural Classification of Proteins)1EFV    1T9G    2A1T    2A1U   
CATH (Classification of proteins structures)1EFV    1T9G    2A1T    2A1U   
SuperfamilyP38117
Human Protein AtlasENSG00000105379
Peptide AtlasP38117
HPRD00557
IPIIPI00004902   IPI00556451   
Protein Interaction databases
DIP (DOE-UCLA)P38117
IntAct (EBI)P38117
FunCoupENSG00000105379
BioGRIDETFB
STRING (EMBL)ETFB
ZODIACETFB
Ontologies - Pathways
QuickGOP38117
Ontology : AmiGOmitochondrion  mitochondrial matrix  electron carrier activity  respiratory electron transport chain  intracellular membrane-bounded organelle  cellular metabolic process  small molecule metabolic process  extracellular exosome  
Ontology : EGO-EBImitochondrion  mitochondrial matrix  electron carrier activity  respiratory electron transport chain  intracellular membrane-bounded organelle  cellular metabolic process  small molecule metabolic process  extracellular exosome  
NDEx NetworkETFB
Atlas of Cancer Signalling NetworkETFB
Wikipedia pathwaysETFB
Orthology - Evolution
OrthoDB2109
GeneTree (enSembl)ENSG00000105379
Phylogenetic Trees/Animal Genes : TreeFamETFB
HOVERGENP38117
HOGENOMP38117
Homologs : HomoloGeneETFB
Homology/Alignments : Family Browser (UCSC)ETFB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerETFB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ETFB
dbVarETFB
ClinVarETFB
1000_GenomesETFB 
Exome Variant ServerETFB
ExAC (Exome Aggregation Consortium)ETFB (select the gene name)
Genetic variants : HAPMAP2109
Genomic Variants (DGV)ETFB [DGVbeta]
DECIPHER (Syndromes)19:51848409-51858096  ENSG00000105379
CONAN: Copy Number AnalysisETFB 
Mutations
ICGC Data PortalETFB 
TCGA Data PortalETFB 
Broad Tumor PortalETFB
OASIS PortalETFB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICETFB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDETFB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ETFB
DgiDB (Drug Gene Interaction Database)ETFB
DoCM (Curated mutations)ETFB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ETFB (select a term)
intoGenETFB
Cancer3DETFB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM130410    231680   
Orphanet22660    22659   
MedgenETFB
Genetic Testing Registry ETFB
NextProtP38117 [Medical]
TSGene2109
GENETestsETFB
Huge Navigator ETFB [HugePedia]
snp3D : Map Gene to Disease2109
BioCentury BCIQETFB
ClinGenETFB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2109
Chemical/Pharm GKB GenePA27898
Clinical trialETFB
Miscellaneous
canSAR (ICR)ETFB (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineETFB
EVEXETFB
GoPubMedETFB
iHOPETFB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:11 CET 2017

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