Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ETFB (electron transfer flavoprotein subunit beta)

Identity

Alias (NCBI)FP585
MADD
HGNC (Hugo) ETFB
HGNC Previous nameelectron-transfer-flavoprotein, beta polypeptide
LocusID (NCBI) 2109
Atlas_Id 57737
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51345169 and ends at 51366388 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ETFB (19q13.41)::LIM2 (19q13.41)ZNF805 (19q13.43)::ETFB (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ETFB   3482
Cards
Entrez_Gene (NCBI)ETFB    electron transfer flavoprotein subunit beta
AliasesFP585; MADD
GeneCards (Weizmann)ETFB
Ensembl hg19 (Hinxton)ENSG00000105379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105379 [Gene_View]  ENSG00000105379 [Sequence]  chr19:51345169-51366388 [Contig_View]  ETFB [Vega]
ICGC DataPortalENSG00000105379
TCGA cBioPortalETFB
AceView (NCBI)ETFB
Genatlas (Paris)ETFB
SOURCE (Princeton)ETFB
Genetics Home Reference (NIH)ETFB
Genomic and cartography
GoldenPath hg38 (UCSC)ETFB  -     chr19:51345169-51366388 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ETFB  -     19q13.41   [Description]    (hg19-Feb_2009)
GoldenPathETFB - 19q13.41 [CytoView hg19]  ETFB - 19q13.41 [CytoView hg38]
ImmunoBaseENSG00000105379
Genome Data Viewer NCBIETFB [Mapview hg19]  
OMIM130410   231680   
Gene and transcription
Genbank (Entrez)AF370381 AK055285 AK128845 AK291881 AL833205
RefSeq transcript (Entrez)NM_001014763 NM_001985
Consensus coding sequences : CCDS (NCBI)ETFB
Gene ExpressionETFB [ NCBI-GEO ]   ETFB [ EBI - ARRAY_EXPRESS ]   ETFB [ SEEK ]   ETFB [ MEM ]
Gene Expression Viewer (FireBrowse)ETFB [ Firebrowse - Broad ]
GenevisibleExpression of ETFB in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2109
GTEX Portal (Tissue expression)ETFB
Human Protein AtlasENSG00000105379-ETFB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP38117   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP38117  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP38117
PhosPhoSitePlusP38117
Domaine pattern : Prosite (Expaxy)ETF_BETA (PS01065)   
Domains : Interpro (EBI)ET-Flavoprotein_bsu_CS    ETF_a/b_N    ETF_b    ETF_beta_N    Rossmann-like_a/b/a_fold   
Domain families : Pfam (Sanger)ETF (PF01012)   
Domain families : Pfam (NCBI)pfam01012   
Domain families : Smart (EMBL)ETF (SM00893)  
Conserved Domain (NCBI)ETFB
PDB (RSDB)1EFV    1T9G    2A1T    2A1U   
PDB Europe1EFV    1T9G    2A1T    2A1U   
PDB (PDBSum)1EFV    1T9G    2A1T    2A1U   
PDB (IMB)1EFV    1T9G    2A1T    2A1U   
Structural Biology KnowledgeBase1EFV    1T9G    2A1T    2A1U   
SCOP (Structural Classification of Proteins)1EFV    1T9G    2A1T    2A1U   
CATH (Classification of proteins structures)1EFV    1T9G    2A1T    2A1U   
SuperfamilyP38117
AlphaFold pdb e-kbP38117   
Human Protein Atlas [tissue]ENSG00000105379-ETFB [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P38117
IntAct (EBI)P38117
BioGRIDETFB
STRING (EMBL)ETFB
ZODIACETFB
Ontologies - Pathways
QuickGOP38117
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial matrix  mitochondrial matrix  electron transfer activity  electron transfer activity  cellular amino acid catabolic process  respiratory electron transport chain  fatty acid beta-oxidation using acyl-CoA dehydrogenase  electron transfer flavoprotein complex  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial matrix  mitochondrial matrix  electron transfer activity  electron transfer activity  cellular amino acid catabolic process  respiratory electron transport chain  fatty acid beta-oxidation using acyl-CoA dehydrogenase  electron transfer flavoprotein complex  
NDEx NetworkETFB
Atlas of Cancer Signalling NetworkETFB
Wikipedia pathwaysETFB
Orthology - Evolution
OrthoDB2109
GeneTree (enSembl)ENSG00000105379
Phylogenetic Trees/Animal Genes : TreeFamETFB
Homologs : HomoloGeneETFB
Homology/Alignments : Family Browser (UCSC)ETFB
Gene fusions - Rearrangements
Fusion : QuiverETFB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerETFB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ETFB
dbVarETFB
ClinVarETFB
MonarchETFB
1000_GenomesETFB 
Exome Variant ServerETFB
GNOMAD BrowserENSG00000105379
Varsome BrowserETFB
ACMGETFB variants
VarityP38117
Genomic Variants (DGV)ETFB [DGVbeta]
DECIPHERETFB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisETFB 
Mutations
ICGC Data PortalETFB 
TCGA Data PortalETFB 
Broad Tumor PortalETFB
OASIS PortalETFB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICETFB  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DETFB
Mutations and Diseases : HGMDETFB
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaETFB
DgiDB (Drug Gene Interaction Database)ETFB
DoCM (Curated mutations)ETFB
CIViC (Clinical Interpretations of Variants in Cancer)ETFB
Cancer3DETFB
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM130410    231680   
Orphanet22660    22659   
DisGeNETETFB
MedgenETFB
Genetic Testing Registry ETFB
NextProtP38117 [Medical]
GENETestsETFB
Target ValidationETFB
Huge Navigator ETFB [HugePedia]
ClinGenETFB
Clinical trials, drugs, therapy
MyCancerGenomeETFB
Protein Interactions : CTDETFB
Pharm GKB GenePA27898
PharosP38117
Clinical trialETFB
Miscellaneous
canSAR (ICR)ETFB
HarmonizomeETFB
ARCHS4ETFB
DataMed IndexETFB
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXETFB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jan 20 12:32:34 CET 2022

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.