Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ETFBKMT (electron transfer flavoprotein subunit beta lysine methyltransferase)

Identity

Alias (NCBI)C12orf72
ETFB-KMT
METTL20
HGNC (Hugo) ETFBKMT
HGNC Alias symbDKFZp451L235
MGC50559
HGNC Previous nameC12orf72
 METTL20
HGNC Previous namechromosome 12 open reading frame 72
 methyltransferase like 20
LocusID (NCBI) 254013
Atlas_Id 77830
Location 12p11.21  [Link to chromosome band 12p11]
Location_base_pair Starts at 31659187 and ends at 31669082 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BICD1 (12p11.21) / ETFBKMT (12p11.21)KDM6A (Xp11.3) / ETFBKMT (12p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ETFBKMT   28739
Cards
Entrez_Gene (NCBI)ETFBKMT    electron transfer flavoprotein subunit beta lysine methyltransferase
AliasesC12orf72; ETFB-KMT; METTL20
GeneCards (Weizmann)ETFBKMT
Ensembl hg19 (Hinxton)ENSG00000139160 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139160 [Gene_View]  ENSG00000139160 [Sequence]  chr12:31659187-31669082 [Contig_View]  ETFBKMT [Vega]
ICGC DataPortalENSG00000139160
TCGA cBioPortalETFBKMT
AceView (NCBI)ETFBKMT
Genatlas (Paris)ETFBKMT
SOURCE (Princeton)ETFBKMT
Genetics Home Reference (NIH)ETFBKMT
Genomic and cartography
GoldenPath hg38 (UCSC)ETFBKMT  -     chr12:31659187-31669082 +  12p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ETFBKMT  -     12p11.21   [Description]    (hg19-Feb_2009)
GoldenPathETFBKMT - 12p11.21 [CytoView hg19]  ETFBKMT - 12p11.21 [CytoView hg38]
ImmunoBaseENSG00000139160
genome Data Viewer NCBIETFBKMT [Mapview hg19]  
OMIM615256   
Gene and transcription
Genbank (Entrez)AK290248 AL832339 BC039107 BC039417 BC039535
RefSeq transcript (Entrez)NM_001135863 NM_001135864 NM_173802
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ETFBKMT
Alternative Splicing GalleryENSG00000139160
Gene ExpressionETFBKMT [ NCBI-GEO ]   ETFBKMT [ EBI - ARRAY_EXPRESS ]   ETFBKMT [ SEEK ]   ETFBKMT [ MEM ]
Gene Expression Viewer (FireBrowse)ETFBKMT [ Firebrowse - Broad ]
GenevisibleExpression of ETFBKMT in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254013
GTEX Portal (Tissue expression)ETFBKMT
Human Protein AtlasENSG00000139160-ETFBKMT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXQ9
Splice isoforms : SwissVarQ8IXQ9
PhosPhoSitePlusQ8IXQ9
Domains : Interpro (EBI)SAM-dependent_MTases   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ETFBKMT
Blocks (Seattle)ETFBKMT
SuperfamilyQ8IXQ9
Human Protein Atlas [tissue]ENSG00000139160-ETFBKMT [tissue]
Peptide AtlasQ8IXQ9
HPRD14666
IPIIPI00217588   IPI01015805   IPI01009247   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXQ9
IntAct (EBI)Q8IXQ9
BioGRIDETFBKMT
STRING (EMBL)ETFBKMT
ZODIACETFBKMT
Ontologies - Pathways
QuickGOQ8IXQ9
Ontology : AmiGOcytoplasm  mitochondrial matrix  mitochondrial matrix  protein methylation  protein-lysine N-methyltransferase activity  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  peptidyl-lysine trimethylation  heat shock protein binding  protein-containing complex  negative regulation of electron transfer activity  negative regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase  
Ontology : EGO-EBIcytoplasm  mitochondrial matrix  mitochondrial matrix  protein methylation  protein-lysine N-methyltransferase activity  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  peptidyl-lysine trimethylation  heat shock protein binding  protein-containing complex  negative regulation of electron transfer activity  negative regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase  
NDEx NetworkETFBKMT
Atlas of Cancer Signalling NetworkETFBKMT
Wikipedia pathwaysETFBKMT
Orthology - Evolution
OrthoDB254013
GeneTree (enSembl)ENSG00000139160
Phylogenetic Trees/Animal Genes : TreeFamETFBKMT
HOGENOMQ8IXQ9
Homologs : HomoloGeneETFBKMT
Homology/Alignments : Family Browser (UCSC)ETFBKMT
Gene fusions - Rearrangements
Fusion : QuiverETFBKMT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerETFBKMT [hg38]
dbVarETFBKMT
ClinVarETFBKMT
MonarchETFBKMT
1000_GenomesETFBKMT 
Exome Variant ServerETFBKMT
GNOMAD BrowserENSG00000139160
Varsome BrowserETFBKMT
Genomic Variants (DGV)ETFBKMT [DGVbeta]
DECIPHERETFBKMT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisETFBKMT 
Mutations
ICGC Data PortalETFBKMT 
TCGA Data PortalETFBKMT 
Broad Tumor PortalETFBKMT
OASIS PortalETFBKMT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICETFBKMT  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DETFBKMT
Mutations and Diseases : HGMDETFBKMT
BioMutasearch ETFBKMT
DgiDB (Drug Gene Interaction Database)ETFBKMT
DoCM (Curated mutations)ETFBKMT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ETFBKMT (select a term)
intoGenETFBKMT
Cancer3DETFBKMT(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615256   
Orphanet
DisGeNETETFBKMT
MedgenETFBKMT
Genetic Testing Registry ETFBKMT
NextProtQ8IXQ9 [Medical]
GENETestsETFBKMT
Target ValidationETFBKMT
Huge Navigator ETFBKMT [HugePedia]
ClinGenETFBKMT
Clinical trials, drugs, therapy
MyCancerGenomeETFBKMT
Protein Interactions : CTD
Pharm GKB GenePA164716777
Clinical trialETFBKMT
Miscellaneous
canSAR (ICR)ETFBKMT (select the gene name)
HarmonizomeETFBKMT
DataMed IndexETFBKMT
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineETFBKMT
EVEXETFBKMT
GoPubMedETFBKMT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:53:16 CET 2020
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