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ETFBKMT (electron transfer flavoprotein beta subunit lysine methyltransferase)

Identity

Alias_namesC12orf72
METTL20
chromosome 12 open reading frame 72
methyltransferase like 20
Alias_symbol (synonym)DKFZp451L235
MGC50559
Other aliasETFB-KMT
HGNC (Hugo) ETFBKMT
LocusID (NCBI) 254013
Atlas_Id 77830
Location 12p11.21  [Link to chromosome band 12p11]
Location_base_pair Starts at 31659675 and ends at 31669082 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BICD1 (12p11.21) / ETFBKMT (12p11.21)KDM6A (Xp11.3) / ETFBKMT (12p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ETFBKMT   28739
Cards
Entrez_Gene (NCBI)ETFBKMT  254013  electron transfer flavoprotein beta subunit lysine methyltransferase
AliasesC12orf72; ETFB-KMT; METTL20
GeneCards (Weizmann)ETFBKMT
Ensembl hg19 (Hinxton)ENSG00000139160 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139160 [Gene_View]  chr12:31659675-31669082 [Contig_View]  ETFBKMT [Vega]
ICGC DataPortalENSG00000139160
TCGA cBioPortalETFBKMT
AceView (NCBI)ETFBKMT
Genatlas (Paris)ETFBKMT
WikiGenes254013
SOURCE (Princeton)ETFBKMT
Genetics Home Reference (NIH)ETFBKMT
Genomic and cartography
GoldenPath hg38 (UCSC)ETFBKMT  -     chr12:31659675-31669082 +  12p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ETFBKMT  -     12p11.21   [Description]    (hg19-Feb_2009)
EnsemblETFBKMT - 12p11.21 [CytoView hg19]  ETFBKMT - 12p11.21 [CytoView hg38]
Mapping of homologs : NCBIETFBKMT [Mapview hg19]  ETFBKMT [Mapview hg38]
OMIM615256   
Gene and transcription
Genbank (Entrez)AK290248 AL832339 BC039107 BC039417 BC039535
RefSeq transcript (Entrez)NM_001135863 NM_001135864 NM_173802
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ETFBKMT
Cluster EST : UnigeneHs.740628 [ NCBI ]
CGAP (NCI)Hs.740628
Alternative Splicing GalleryENSG00000139160
Gene ExpressionETFBKMT [ NCBI-GEO ]   ETFBKMT [ EBI - ARRAY_EXPRESS ]   ETFBKMT [ SEEK ]   ETFBKMT [ MEM ]
Gene Expression Viewer (FireBrowse)ETFBKMT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254013
GTEX Portal (Tissue expression)ETFBKMT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXQ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXQ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXQ9
Splice isoforms : SwissVarQ8IXQ9
PhosPhoSitePlusQ8IXQ9
Domains : Interpro (EBI)SAM-dependent_MTases   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ETFBKMT
DMDM Disease mutations254013
Blocks (Seattle)ETFBKMT
SuperfamilyQ8IXQ9
Human Protein AtlasENSG00000139160
Peptide AtlasQ8IXQ9
HPRD14666
IPIIPI00217588   IPI01015805   IPI01009247   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXQ9
IntAct (EBI)Q8IXQ9
FunCoupENSG00000139160
BioGRIDETFBKMT
STRING (EMBL)ETFBKMT
ZODIACETFBKMT
Ontologies - Pathways
QuickGOQ8IXQ9
Ontology : AmiGOmitochondrial matrix  mitochondrial matrix  protein methylation  protein-lysine N-methyltransferase activity  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  peptidyl-lysine trimethylation  negative regulation of electron carrier activity  negative regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase  
Ontology : EGO-EBImitochondrial matrix  mitochondrial matrix  protein methylation  protein-lysine N-methyltransferase activity  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  peptidyl-lysine trimethylation  negative regulation of electron carrier activity  negative regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase  
NDEx NetworkETFBKMT
Atlas of Cancer Signalling NetworkETFBKMT
Wikipedia pathwaysETFBKMT
Orthology - Evolution
OrthoDB254013
GeneTree (enSembl)ENSG00000139160
Phylogenetic Trees/Animal Genes : TreeFamETFBKMT
HOVERGENQ8IXQ9
HOGENOMQ8IXQ9
Homologs : HomoloGeneETFBKMT
Homology/Alignments : Family Browser (UCSC)ETFBKMT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerETFBKMT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ETFBKMT
dbVarETFBKMT
ClinVarETFBKMT
1000_GenomesETFBKMT 
Exome Variant ServerETFBKMT
ExAC (Exome Aggregation Consortium)ETFBKMT (select the gene name)
Genetic variants : HAPMAP254013
Genomic Variants (DGV)ETFBKMT [DGVbeta]
DECIPHERETFBKMT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisETFBKMT 
Mutations
ICGC Data PortalETFBKMT 
TCGA Data PortalETFBKMT 
Broad Tumor PortalETFBKMT
OASIS PortalETFBKMT [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDETFBKMT
BioMutasearch ETFBKMT
DgiDB (Drug Gene Interaction Database)ETFBKMT
DoCM (Curated mutations)ETFBKMT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ETFBKMT (select a term)
intoGenETFBKMT
Cancer3DETFBKMT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615256   
Orphanet
MedgenETFBKMT
Genetic Testing Registry ETFBKMT
NextProtQ8IXQ9 [Medical]
TSGene254013
GENETestsETFBKMT
Target ValidationETFBKMT
Huge Navigator ETFBKMT [HugePedia]
snp3D : Map Gene to Disease254013
BioCentury BCIQETFBKMT
ClinGenETFBKMT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254013
Chemical/Pharm GKB GenePA164716777
Clinical trialETFBKMT
Miscellaneous
canSAR (ICR)ETFBKMT (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineETFBKMT
EVEXETFBKMT
GoPubMedETFBKMT
iHOPETFBKMT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:23 CEST 2017

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