Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ETFRF1 (electron transfer flavoprotein regulatory factor 1)

Identity

Other aliasLYRM5
HGNC (Hugo) ETFRF1
LocusID (NCBI) 144363
Atlas_Id 78648
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 25195216 and ends at 25205015 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ETFRF1   27052
Cards
Entrez_Gene (NCBI)ETFRF1  144363  electron transfer flavoprotein regulatory factor 1
AliasesLYRM5
GeneCards (Weizmann)ETFRF1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:25195216-25205015 [Contig_View]  ETFRF1 [Vega]
TCGA cBioPortalETFRF1
AceView (NCBI)ETFRF1
Genatlas (Paris)ETFRF1
WikiGenes144363
SOURCE (Princeton)ETFRF1
Genetics Home Reference (NIH)ETFRF1
Genomic and cartography
GoldenPath hg38 (UCSC)ETFRF1  -     chr12:25195216-25205015 +  12p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ETFRF1  -     12p12.1   [Description]    (hg19-Feb_2009)
EnsemblETFRF1 - 12p12.1 [CytoView hg19]  ETFRF1 - 12p12.1 [CytoView hg38]
Mapping of homologs : NCBIETFRF1 [Mapview hg19]  ETFRF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057730 AK095164 BC071769 BC100276 BG771497
RefSeq transcript (Entrez)NM_001001660
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ETFRF1
Cluster EST : UnigeneHs.209151 [ NCBI ]
CGAP (NCI)Hs.209151
Gene ExpressionETFRF1 [ NCBI-GEO ]   ETFRF1 [ EBI - ARRAY_EXPRESS ]   ETFRF1 [ SEEK ]   ETFRF1 [ MEM ]
Gene Expression Viewer (FireBrowse)ETFRF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144363
GTEX Portal (Tissue expression)ETFRF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IPR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IPR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IPR1
Splice isoforms : SwissVarQ6IPR1
PhosPhoSitePlusQ6IPR1
Domains : Interpro (EBI)Complex1_LYR   
Domain families : Pfam (Sanger)Complex1_LYR (PF05347)   
Domain families : Pfam (NCBI)pfam05347   
Conserved Domain (NCBI)ETFRF1
DMDM Disease mutations144363
Blocks (Seattle)ETFRF1
SuperfamilyQ6IPR1
Peptide AtlasQ6IPR1
HPRD14067
IPIIPI01026476   IPI01025743   IPI01025019   IPI01026251   IPI01026186   IPI00760602   
Protein Interaction databases
DIP (DOE-UCLA)Q6IPR1
IntAct (EBI)Q6IPR1
BioGRIDETFRF1
STRING (EMBL)ETFRF1
ZODIACETFRF1
Ontologies - Pathways
QuickGOQ6IPR1
Ontology : AmiGOprotein binding  mitochondrion  respiratory electron transport chain  
Ontology : EGO-EBIprotein binding  mitochondrion  respiratory electron transport chain  
NDEx NetworkETFRF1
Atlas of Cancer Signalling NetworkETFRF1
Wikipedia pathwaysETFRF1
Orthology - Evolution
OrthoDB144363
Phylogenetic Trees/Animal Genes : TreeFamETFRF1
HOVERGENQ6IPR1
HOGENOMQ6IPR1
Homologs : HomoloGeneETFRF1
Homology/Alignments : Family Browser (UCSC)ETFRF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerETFRF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ETFRF1
dbVarETFRF1
ClinVarETFRF1
1000_GenomesETFRF1 
Exome Variant ServerETFRF1
ExAC (Exome Aggregation Consortium)ETFRF1 (select the gene name)
Genetic variants : HAPMAP144363
Genomic Variants (DGV)ETFRF1 [DGVbeta]
DECIPHERETFRF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisETFRF1 
Mutations
ICGC Data PortalETFRF1 
TCGA Data PortalETFRF1 
Broad Tumor PortalETFRF1
OASIS PortalETFRF1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDETFRF1
BioMutasearch ETFRF1
DgiDB (Drug Gene Interaction Database)ETFRF1
DoCM (Curated mutations)ETFRF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ETFRF1 (select a term)
intoGenETFRF1
Cancer3DETFRF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenETFRF1
Genetic Testing Registry ETFRF1
NextProtQ6IPR1 [Medical]
TSGene144363
GENETestsETFRF1
Huge Navigator ETFRF1 [HugePedia]
snp3D : Map Gene to Disease144363
BioCentury BCIQETFRF1
ClinGenETFRF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144363
Chemical/Pharm GKB GenePA162394773
Clinical trialETFRF1
Miscellaneous
canSAR (ICR)ETFRF1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineETFRF1
EVEXETFRF1
GoPubMedETFRF1
iHOPETFRF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:10:13 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.