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ETNPPL (ethanolamine-phosphate phospho-lyase)

Identity

Alias_namesAGXT2L1
alanine-glyoxylate aminotransferase 2-like 1
Other alias
HGNC (Hugo) ETNPPL
LocusID (NCBI) 64850
Atlas_Id 55834
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 108742046 and ends at 108763079 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ETNPPL   14404
Cards
Entrez_Gene (NCBI)ETNPPL  64850  ethanolamine-phosphate phospho-lyase
AliasesAGXT2L1
GeneCards (Weizmann)ETNPPL
Ensembl hg19 (Hinxton)ENSG00000164089 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164089 [Gene_View]  chr4:108742046-108763079 [Contig_View]  ETNPPL [Vega]
ICGC DataPortalENSG00000164089
TCGA cBioPortalETNPPL
AceView (NCBI)ETNPPL
Genatlas (Paris)ETNPPL
WikiGenes64850
SOURCE (Princeton)ETNPPL
Genetics Home Reference (NIH)ETNPPL
Genomic and cartography
GoldenPath hg38 (UCSC)ETNPPL  -     chr4:108742046-108763079 -  4q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ETNPPL  -     4q25   [Description]    (hg19-Feb_2009)
EnsemblETNPPL - 4q25 [CytoView hg19]  ETNPPL - 4q25 [CytoView hg38]
Mapping of homologs : NCBIETNPPL [Mapview hg19]  ETNPPL [Mapview hg38]
OMIM614682   
Gene and transcription
Genbank (Entrez)AJ298293 AK091888 AK294072 AK294235 BC022526
RefSeq transcript (Entrez)NM_001146590 NM_001146627 NM_001331031 NM_001331032 NM_001331033 NM_031279
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ETNPPL
Cluster EST : UnigeneHs.106576 [ NCBI ]
CGAP (NCI)Hs.106576
Alternative Splicing GalleryENSG00000164089
Gene ExpressionETNPPL [ NCBI-GEO ]   ETNPPL [ EBI - ARRAY_EXPRESS ]   ETNPPL [ SEEK ]   ETNPPL [ MEM ]
Gene Expression Viewer (FireBrowse)ETNPPL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64850
GTEX Portal (Tissue expression)ETNPPL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBG4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBG4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBG4
Splice isoforms : SwissVarQ8TBG4
Catalytic activity : Enzyme4.2.3.2 [ Enzyme-Expasy ]   4.2.3.24.2.3.2 [ IntEnz-EBI ]   4.2.3.2 [ BRENDA ]   4.2.3.2 [ KEGG ]   
PhosPhoSitePlusQ8TBG4
Domaine pattern : Prosite (Expaxy)AA_TRANSFER_CLASS_3 (PS00600)   
Domains : Interpro (EBI)Aminotrans_3    PyrdxlP-dep_Trfase    PyrdxlP-dep_Trfase_major_sub1    PyrdxlP-dep_Trfase_major_sub2   
Domain families : Pfam (Sanger)Aminotran_3 (PF00202)   
Domain families : Pfam (NCBI)pfam00202   
Conserved Domain (NCBI)ETNPPL
DMDM Disease mutations64850
Blocks (Seattle)ETNPPL
SuperfamilyQ8TBG4
Human Protein AtlasENSG00000164089
Peptide AtlasQ8TBG4
HPRD10639
IPIIPI00152204   IPI00845332   IPI00965547   IPI00929120   IPI00964970   IPI00965281   IPI00968244   IPI00965842   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBG4
IntAct (EBI)Q8TBG4
FunCoupENSG00000164089
BioGRIDETNPPL
STRING (EMBL)ETNPPL
ZODIACETNPPL
Ontologies - Pathways
QuickGOQ8TBG4
Ontology : AmiGOcellular_component  mitochondrion  mitochondrial matrix  phosphatidylethanolamine biosynthetic process  alanine-glyoxylate transaminase activity  pyridoxal phosphate binding  identical protein binding  ethanolamine-phosphate phospho-lyase activity  
Ontology : EGO-EBIcellular_component  mitochondrion  mitochondrial matrix  phosphatidylethanolamine biosynthetic process  alanine-glyoxylate transaminase activity  pyridoxal phosphate binding  identical protein binding  ethanolamine-phosphate phospho-lyase activity  
NDEx NetworkETNPPL
Atlas of Cancer Signalling NetworkETNPPL
Wikipedia pathwaysETNPPL
Orthology - Evolution
OrthoDB64850
GeneTree (enSembl)ENSG00000164089
Phylogenetic Trees/Animal Genes : TreeFamETNPPL
HOVERGENQ8TBG4
HOGENOMQ8TBG4
Homologs : HomoloGeneETNPPL
Homology/Alignments : Family Browser (UCSC)ETNPPL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerETNPPL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ETNPPL
dbVarETNPPL
ClinVarETNPPL
1000_GenomesETNPPL 
Exome Variant ServerETNPPL
ExAC (Exome Aggregation Consortium)ETNPPL (select the gene name)
Genetic variants : HAPMAP64850
Genomic Variants (DGV)ETNPPL [DGVbeta]
DECIPHERETNPPL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisETNPPL 
Mutations
ICGC Data PortalETNPPL 
TCGA Data PortalETNPPL 
Broad Tumor PortalETNPPL
OASIS PortalETNPPL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDETNPPL
BioMutasearch ETNPPL
DgiDB (Drug Gene Interaction Database)ETNPPL
DoCM (Curated mutations)ETNPPL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ETNPPL (select a term)
intoGenETNPPL
Cancer3DETNPPL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614682   
Orphanet
MedgenETNPPL
Genetic Testing Registry ETNPPL
NextProtQ8TBG4 [Medical]
TSGene64850
GENETestsETNPPL
Target ValidationETNPPL
Huge Navigator ETNPPL [HugePedia]
snp3D : Map Gene to Disease64850
BioCentury BCIQETNPPL
ClinGenETNPPL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64850
Chemical/Pharm GKB GenePA24635
Clinical trialETNPPL
Miscellaneous
canSAR (ICR)ETNPPL (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineETNPPL
EVEXETNPPL
GoPubMedETNPPL
iHOPETNPPL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:32:57 CEST 2017

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