Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ETV1 (ets variant 1)

Identity

Other namesER81
HGNC (Hugo) ETV1
LocusID (NCBI) 2115
Location 7p21.2
Location_base_pair Starts at 13930856 and ends at 14029642 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Breakpoints

 

External links

Nomenclature
HGNC (Hugo)ETV1   3490
Entrez_Gene (NCBI)ETV1  2115  ets variant 1
Cards
GeneCards (Weizmann)ETV1
Ensembl (Hinxton)ENSG00000006468 [Gene_View]  chr7:13930856-14029642 [Contig_View]  ETV1 [Vega]
AceView (NCBI)ETV1
Genatlas (Paris)ETV1
SOURCE (Stanford)NM_001163147 NM_001163148 NM_001163149 NM_001163150 NM_001163151 NM_001163152 NM_004956
Genomic and cartography
GoldenPath (UCSC)ETV1  -  7p21.2   chr7:13930856-14029642 -  7p21.2   [Description]    (hg19-Feb_2009)
EnsemblETV1 - 7p21.2 [CytoView]
Mapping of homologs : NCBIETV1 [Mapview]
OMIM600541   
Gene and transcription
Genbank (Entrez)AB209202 AF070641 AK055368 AK293802 AK294572
RefSeq transcript (SRS)NM_001163147 NM_001163148 NM_001163149 NM_001163150 NM_001163151 NM_001163152 NM_004956
RefSeq transcript (Entrez)NM_001163147 NM_001163148 NM_001163149 NM_001163150 NM_001163151 NM_001163152 NM_004956
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NC_018918 NG_029795 NT_007819 NT_079592 NW_001839003 NW_004078029
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NG_029795 NT_007819 NT_079592 NW_001839003 NW_004078029
Consensus coding sequences : CCDS (NCBI)ETV1
Cluster EST : UnigeneHs.22634 [ SRS ] Hs.22634 [ NCBI ]
CGAP (NCI)Hs.22634
Alternative Splicing : Fast-db (Paris)GSHG0028018
Alternative Splicing GalleryENSG00000006468
Gene ExpressionETV1 [ NCBI-GEO ]   ETV1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50549 (SRS) P50549 (Uniprot)
NextProtP50549
With graphics : InterProP50549
Splice isoforms : SwissVarP50549(Swissvar)
Domaine pattern : Prosite (SRS)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domaine pattern : Prosite (Expaxy)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domains : Interpro (SRS)Ets    ETS_PEA3_N    WHTH_trsnscrt_rep_DNA-bd   
Domains : Interpro (EBI)Ets    ETS_PEA3_N    WHTH_trsnscrt_rep_DNA-bd   
Related proteins : CluSTrP50549
Domain families : Pfam (SRS)Ets (PF00178)    ETS_PEA3_N (PF04621)   
Domain families : Pfam (Sanger)Ets (PF00178)    ETS_PEA3_N (PF04621)   
Domain families : Pfam (NCBI)pfam00178    pfam04621   
Domain families : Smart (EMBL)ETS (SM00413)  
DMDM2115
Blocks (Seattle)P50549
PDB (SRS)4AVP    4B06   
PDB (PDBSum)4AVP    4B06   
PDB (IMB)4AVP    4B06   
PDB (RSDB)4AVP    4B06   
Human Protein AtlasENSG00000006468
HPRD02765
IPIIPI00306430   IPI00221065   IPI00892613   IPI00893973   IPI00893217   IPI00744316   IPI00892747   IPI00892607   IPI00894345   IPI00894180   IPI00894082   
Protein Interaction databases
DIP (DOE-UCLA)P50549
IntAct (EBI)P50549
FunCoupENSG00000006468
REACTOMEETV1
Protein Interaction Database2115
BioGRIDETV1
InParanoidP50549
Interologous Interaction database P50549
IntegromeDBETV1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ETV1
SNP (GeneSNP Utah)ETV1
SNP : HGBaseETV1
Genetic variants : HAPMAPETV1
Cancer Gene: CensusETV1 
Somatic Mutations in Cancer : COSMICETV1 
CONAN: Copy Number AnalysisETV1 
Rearrangement : COSMICACSL3 [2q36.1]  -  ETV1 [7p21.2]
Rearrangement : COSMICEWSR1 [22q12.2]  -  ETV1 [7p21.2]
Rearrangement : COSMICHNRNPA2B1 [7p15.2]  -  ETV1 [7p21.2]
Rearrangement : COSMICKLK2 [19q13.33]  -  ETV1 [7p21.2]
Rearrangement : COSMICSLC45A3 [1q32.1]  -  ETV1 [7p21.2]
Rearrangement : COSMICTMPRSS2 [21q22.3]  -  ETV1 [7p21.2]
Translocation Breakpoints in Cancer : TICdbETV1 
Mutations and Diseases : HGMDETV1
OMIM600541   
GENETests600541   
Disease Genetic AssociationETV1
Huge Navigator ETV1 [HugePedia]  ETV1 [HugeCancerGEM]
Genomic VariantsETV1  ETV1 [DGVbeta]
snp3D : Map Gene to Disease2115
General knowledge
Homologs : HomoloGeneETV1
Homology/Alignments : Family Browser (UCSC)ETV1
Phylogenetic Trees/Animal Genes : TreeFamETV1
Chemical/Protein Interactions : CTD2115
Chemical/Pharm GKB GenePA27904
Clinical trialETV1
Cancer Resource (Charite)ENSG00000006468
Ontology : AmiGOsequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription from RNA polymerase II promoter  axon guidance  muscle organ development  mechanosensory behavior  sequence-specific DNA binding  positive regulation of transcription, DNA-dependent  peripheral nervous system neuron development  
Ontology : EGO-EBIsequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription from RNA polymerase II promoter  axon guidance  muscle organ development  mechanosensory behavior  sequence-specific DNA binding  positive regulation of transcription, DNA-dependent  peripheral nervous system neuron development  
Other databases
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
PubGeneETV1
iHOPETV1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:28:16 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.