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ETV2 (ets variant 2)

Identity

Other namesER71
ETSRP71
HGNC (Hugo) ETV2
LocusID (NCBI) 2116
Location 19q13.12
Location_base_pair Starts at 36132647 and ends at 36135773 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ETV2   3491
Entrez_Gene (NCBI)ETV2  2116  ets variant 2
Cards
GeneCards (Weizmann)ETV2
Ensembl (Hinxton)ENSG00000105672 [Gene_View]  chr19:36132647-36135773 [Contig_View]  ETV2 [Vega]
AceView (NCBI)ETV2
Genatlas (Paris)ETV2
SOURCE (Stanford)NM_014209
Genomic and cartography
GoldenPath (UCSC)ETV2  -  19q13.12   chr19:36132647-36135773 +  19q13.12   [Description]    (hg19-Feb_2009)
EnsemblETV2 - 19q13.12 [CytoView]
Mapping of homologs : NCBIETV2 [Mapview]
OMIM609358   
Gene and transcription
Genbank (Entrez)AA885210 AF000671 AK097439 BC040908 BC107123
RefSeq transcript (SRS)NM_014209
RefSeq transcript (Entrez)NM_014209
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838494 NW_004078099
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838494 NW_004078099
Consensus coding sequences : CCDS (NCBI)ETV2
Cluster EST : UnigeneHs.194061 [ SRS ] Hs.194061 [ NCBI ]
CGAP (NCI)Hs.194061
Alternative Splicing : Fast-db (Paris)GSHG0014837
Alternative Splicing GalleryENSG00000105672
Gene ExpressionETV2 [ NCBI-GEO ]   ETV2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00321 (SRS) O00321 (Uniprot)
NextProtO00321
With graphics : InterProO00321
Splice isoforms : SwissVarO00321(Swissvar)
Domaine pattern : Prosite (SRS)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domaine pattern : Prosite (Expaxy)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domains : Interpro (SRS)Ets    WHTH_trsnscrt_rep_DNA-bd   
Domains : Interpro (EBI)Ets    WHTH_trsnscrt_rep_DNA-bd   
Related proteins : CluSTrO00321
Domain families : Pfam (SRS)Ets (PF00178)   
Domain families : Pfam (Sanger)Ets (PF00178)   
Domain families : Pfam (NCBI)pfam00178   
Domain families : Smart (EMBL)ETS (SM00413)  
DMDM2116
Blocks (Seattle)O00321
Human Protein AtlasENSG00000105672
HPRD16871
IPIIPI00654648   IPI00654570   IPI00743432   IPI00893164   
Protein Interaction databases
DIP (DOE-UCLA)O00321
IntAct (EBI)O00321
FunCoupENSG00000105672
REACTOMEETV2
Protein Interaction Database2116
BioGRIDETV2
InParanoidO00321
Interologous Interaction database O00321
IntegromeDBETV2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ETV2
SNP (GeneSNP Utah)ETV2
SNP : HGBaseETV2
Genetic variants : HAPMAPETV2
Somatic Mutations in Cancer : COSMICETV2 
CONAN: Copy Number AnalysisETV2 
Mutations and Diseases : HGMDETV2
OMIM609358   
GENETests609358   
Disease Genetic AssociationETV2
Huge Navigator ETV2 [HugePedia]  ETV2 [HugeCancerGEM]
Genomic VariantsETV2  ETV2 [DGVbeta]
snp3D : Map Gene to Disease2116
General knowledge
Homologs : HomoloGeneETV2
Homology/Alignments : Family Browser (UCSC)ETV2
Phylogenetic Trees/Animal Genes : TreeFamETV2
Chemical/Protein Interactions : CTD2116
Chemical/Pharm GKB GenePA27905
Clinical trialETV2
Cancer Resource (Charite)ENSG00000105672
Ontology : AmiGOblastocyst development  placenta development  sequence-specific DNA binding transcription factor activity  nucleus  apoptotic process  Notch signaling pathway  Wnt receptor signaling pathway  erythrocyte differentiation  sequence-specific DNA binding  positive regulation of endothelial cell differentiation  positive regulation of transcription from RNA polymerase II promoter  blood vessel morphogenesis  BMP signaling pathway involved in mesodermal cell fate specification  positive regulation of mesoderm development  
Ontology : EGO-EBIblastocyst development  placenta development  sequence-specific DNA binding transcription factor activity  nucleus  apoptotic process  Notch signaling pathway  Wnt receptor signaling pathway  erythrocyte differentiation  sequence-specific DNA binding  positive regulation of endothelial cell differentiation  positive regulation of transcription from RNA polymerase II promoter  blood vessel morphogenesis  BMP signaling pathway involved in mesodermal cell fate specification  positive regulation of mesoderm development  
Other databases
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
PubGeneETV2
iHOPETV2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:28:19 CEST 2013
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