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ETV3 (ets variant 3)

Identity

Other namesMETS
PE-1
PE1
bA110J1.4
HGNC (Hugo) ETV3
LocusID (NCBI) 2117
Atlas_Id 40504
Location 1q23.1
Location_base_pair Starts at 157094459 and ends at 157108383 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ETV3   3492
Cards
Entrez_Gene (NCBI)ETV3  2117  ets variant 3
GeneCards (Weizmann)ETV3
Ensembl hg19 (Hinxton)ENSG00000117036 [Gene_View]  chr1:157094459-157108383 [Contig_View]  ETV3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000117036 [Gene_View]  chr1:157094459-157108383 [Contig_View]  ETV3 [Vega]
ICGC DataPortalENSG00000117036
TCGA cBioPortalETV3
AceView (NCBI)ETV3
Genatlas (Paris)ETV3
WikiGenes2117
SOURCE (Princeton)ETV3
Genomic and cartography
GoldenPath hg19 (UCSC)ETV3  -     chr1:157094459-157108383 -  1q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ETV3  -     1q23.1   [Description]    (hg38-Dec_2013)
EnsemblETV3 - 1q23.1 [CytoView hg19]  ETV3 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIETV3 [Mapview hg19]  ETV3 [Mapview hg38]
OMIM164873   
Gene and transcription
Genbank (Entrez)AF218540 AK304789 AK316274 BC022868 DQ893155
RefSeq transcript (Entrez)NM_001145312 NM_005240
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)ETV3
Cluster EST : UnigeneHs.105636 [ NCBI ]
CGAP (NCI)Hs.105636
Alternative Splicing : Fast-db (Paris)GSHG0002624
Alternative Splicing GalleryENSG00000117036
Gene ExpressionETV3 [ NCBI-GEO ]     ETV3 [ SEEK ]   ETV3 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP41162 (Uniprot)
NextProtP41162  [Medical]
With graphics : InterProP41162
Splice isoforms : SwissVarP41162 (Swissvar)
Domaine pattern : Prosite (Expaxy)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domains : Interpro (EBI)Ets_dom    WHTH_DNA-bd_dom   
Related proteins : CluSTrP41162
Domain families : Pfam (Sanger)Ets (PF00178)   
Domain families : Pfam (NCBI)pfam00178   
Domain families : Smart (EMBL)ETS (SM00413)  
DMDM Disease mutations2117
Blocks (Seattle)P41162
Human Protein AtlasENSG00000117036
Peptide AtlasP41162
HPRD01282
IPIIPI00032598   IPI00514913   
Protein Interaction databases
DIP (DOE-UCLA)P41162
IntAct (EBI)P41162
FunCoupENSG00000117036
BioGRIDETV3
IntegromeDBETV3
STRING (EMBL)ETV3
Ontologies - Pathways
QuickGOP41162
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding RNA polymerase II transcription factor activity  molecular_function  nucleus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  biological_process  transcriptional repressor complex  cell differentiation  sequence-specific DNA binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding RNA polymerase II transcription factor activity  molecular_function  nucleus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  biological_process  transcriptional repressor complex  cell differentiation  sequence-specific DNA binding  
Pathways : BIOCARTAMETS affect on Macrophage Differentiation [Genes]   
Protein Interaction DatabaseETV3
DoCM (Curated mutations)ETV3
Wikipedia pathwaysETV3
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerETV3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ETV3
dbVarETV3
ClinVarETV3
1000_GenomesETV3 
Exome Variant ServerETV3
SNP (GeneSNP Utah)ETV3
SNP : HGBaseETV3
Genetic variants : HAPMAPETV3
Genomic Variants (DGV)ETV3 [DGVbeta]
Mutations
ICGC Data PortalETV3 
TCGA Data PortalETV3 
Tumor PortalETV3
Somatic Mutations in Cancer : COSMICETV3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:157094459-157108383
CONAN: Copy Number AnalysisETV3 
Mutations and Diseases : HGMDETV3
OMIM164873   
MedgenETV3
NextProtP41162 [Medical]
GENETestsETV3
Disease Genetic AssociationETV3
Huge Navigator ETV3 [HugePedia]  ETV3 [HugeCancerGEM]
snp3D : Map Gene to Disease2117
DGIdb (Drug Gene Interaction db)ETV3
General knowledge
Homologs : HomoloGeneETV3
Homology/Alignments : Family Browser (UCSC)ETV3
Phylogenetic Trees/Animal Genes : TreeFamETV3
Chemical/Protein Interactions : CTD2117
Chemical/Pharm GKB GenePA27906
Clinical trialETV3
Cancer Resource (Charite)ENSG00000117036
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
CoreMineETV3
GoPubMedETV3
iHOPETV3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Apr 13 14:23:49 CEST 2015

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