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ETV3 (ets variant 3)

Identity

Other namesMETS
PE-1
PE1
bA110J1.4
HGNC (Hugo) ETV3
LocusID (NCBI) 2117
Location 1q23.1
Location_base_pair Starts at 157094459 and ends at 157108383 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ETV3   3492
Cards
Entrez_Gene (NCBI)ETV3  2117  ets variant 3
GeneCards (Weizmann)ETV3
Ensembl (Hinxton)ENSG00000117036 [Gene_View]  chr1:157094459-157108383 [Contig_View]  ETV3 [Vega]
ICGC DataPortalENSG00000117036
cBioPortalETV3
AceView (NCBI)ETV3
Genatlas (Paris)ETV3
WikiGenes2117
SOURCE (Princeton)NM_001145312 NM_005240
Genomic and cartography
GoldenPath (UCSC)ETV3  -  1q23.1   chr1:157094459-157108383 -  1q23.1   [Description]    (hg19-Feb_2009)
EnsemblETV3 - 1q23.1 [CytoView]
Mapping of homologs : NCBIETV3 [Mapview]
OMIM164873   
Gene and transcription
Genbank (Entrez)AF218540 AK304789 AK316274 BC022868 DQ893155
RefSeq transcript (Entrez)NM_001145312 NM_005240
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838531 NW_004929293
Consensus coding sequences : CCDS (NCBI)ETV3
Cluster EST : UnigeneHs.105636 [ NCBI ]
CGAP (NCI)Hs.105636
Alternative Splicing : Fast-db (Paris)GSHG0002624
Alternative Splicing GalleryENSG00000117036
Gene ExpressionETV3 [ NCBI-GEO ]     ETV3 [ SEEK ]   ETV3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP41162 (Uniprot)
NextProtP41162  [Medical]
With graphics : InterProP41162
Splice isoforms : SwissVarP41162 (Swissvar)
Domaine pattern : Prosite (Expaxy)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domains : Interpro (EBI)Ets_dom [organisation]   WHTH_DNA-bd_dom [organisation]  
Related proteins : CluSTrP41162
Domain families : Pfam (Sanger)Ets (PF00178)   
Domain families : Pfam (NCBI)pfam00178   
Domain families : Smart (EMBL)ETS (SM00413)  
DMDM Disease mutations2117
Blocks (Seattle)P41162
Human Protein AtlasENSG00000117036 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP41162
HPRD01282
IPIIPI00032598   IPI00514913   
Protein Interaction databases
DIP (DOE-UCLA)P41162
IntAct (EBI)P41162
FunCoupENSG00000117036
BioGRIDETV3
InParanoidP41162
Interologous Interaction database P41162
IntegromeDBETV3
STRING (EMBL)ETV3
Ontologies - Pathways
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding RNA polymerase II transcription factor activity  molecular_function  nucleus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  biological_process  transcriptional repressor complex  cell differentiation  sequence-specific DNA binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding RNA polymerase II transcription factor activity  molecular_function  nucleus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  biological_process  transcriptional repressor complex  cell differentiation  sequence-specific DNA binding  
Pathways : BIOCARTAMETS affect on Macrophage Differentiation [Genes]   
Protein Interaction DatabaseETV3
Wikipedia pathwaysETV3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ETV3
snp3D : Map Gene to Disease2117
SNP (GeneSNP Utah)ETV3
SNP : HGBaseETV3
Genetic variants : HAPMAPETV3
Exome VariantETV3
1000_GenomesETV3 
ICGC programENSG00000117036 
Somatic Mutations in Cancer : COSMICETV3 
CONAN: Copy Number AnalysisETV3 
Mutations and Diseases : HGMDETV3
Genomic VariantsETV3  ETV3 [DGVbeta]
dbVarETV3
ClinVarETV3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM164873   
MedgenETV3
GENETestsETV3
Disease Genetic AssociationETV3
Huge Navigator ETV3 [HugePedia]  ETV3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneETV3
Homology/Alignments : Family Browser (UCSC)ETV3
Phylogenetic Trees/Animal Genes : TreeFamETV3
Chemical/Protein Interactions : CTD2117
Chemical/Pharm GKB GenePA27906
Clinical trialETV3
Cancer Resource (Charite)ENSG00000117036
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
CoreMineETV3
iHOPETV3
OncoSearchETV3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:53:25 CEST 2014

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