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ETV3L (ETS variant 3 like)

Identity

Alias_namesets variant gene 3-like
Alias_symbol (synonym)FLJ16478
Other alias-
HGNC (Hugo) ETV3L
LocusID (NCBI) 440695
Atlas_Id 46897
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 157092043 and ends at 157099808 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ETV3L   33834
Cards
Entrez_Gene (NCBI)ETV3L  440695  ETS variant 3 like
Aliases
GeneCards (Weizmann)ETV3L
Ensembl hg19 (Hinxton)ENSG00000253831 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253831 [Gene_View]  chr1:157092043-157099808 [Contig_View]  ETV3L [Vega]
ICGC DataPortalENSG00000253831
TCGA cBioPortalETV3L
AceView (NCBI)ETV3L
Genatlas (Paris)ETV3L
WikiGenes440695
SOURCE (Princeton)ETV3L
Genetics Home Reference (NIH)ETV3L
Genomic and cartography
GoldenPath hg38 (UCSC)ETV3L  -     chr1:157092043-157099808 -  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ETV3L  -     1q23.1   [Description]    (hg19-Feb_2009)
EnsemblETV3L - 1q23.1 [CytoView hg19]  ETV3L - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIETV3L [Mapview hg19]  ETV3L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA723297 AK131392
RefSeq transcript (Entrez)NM_001004341
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ETV3L
Cluster EST : UnigeneHs.127138 [ NCBI ]
CGAP (NCI)Hs.127138
Alternative Splicing GalleryENSG00000253831
Gene ExpressionETV3L [ NCBI-GEO ]   ETV3L [ EBI - ARRAY_EXPRESS ]   ETV3L [ SEEK ]   ETV3L [ MEM ]
Gene Expression Viewer (FireBrowse)ETV3L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440695
GTEX Portal (Tissue expression)ETV3L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZN32   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZN32  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZN32
Splice isoforms : SwissVarQ6ZN32
PhosPhoSitePlusQ6ZN32
Domaine pattern : Prosite (Expaxy)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domains : Interpro (EBI)Ets_dom    ETV3    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Ets (PF00178)   
Domain families : Pfam (NCBI)pfam00178   
Domain families : Smart (EMBL)ETS (SM00413)  
Conserved Domain (NCBI)ETV3L
DMDM Disease mutations440695
Blocks (Seattle)ETV3L
SuperfamilyQ6ZN32
Human Protein AtlasENSG00000253831
Peptide AtlasQ6ZN32
HPRD13365
IPIIPI00442096   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZN32
IntAct (EBI)Q6ZN32
FunCoupENSG00000253831
BioGRIDETV3L
STRING (EMBL)ETV3L
ZODIACETV3L
Ontologies - Pathways
QuickGOQ6ZN32
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  cell differentiation  sequence-specific DNA binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  cell differentiation  sequence-specific DNA binding  
NDEx NetworkETV3L
Atlas of Cancer Signalling NetworkETV3L
Wikipedia pathwaysETV3L
Orthology - Evolution
OrthoDB440695
GeneTree (enSembl)ENSG00000253831
Phylogenetic Trees/Animal Genes : TreeFamETV3L
HOVERGENQ6ZN32
HOGENOMQ6ZN32
Homologs : HomoloGeneETV3L
Homology/Alignments : Family Browser (UCSC)ETV3L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerETV3L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ETV3L
dbVarETV3L
ClinVarETV3L
1000_GenomesETV3L 
Exome Variant ServerETV3L
ExAC (Exome Aggregation Consortium)ETV3L (select the gene name)
Genetic variants : HAPMAP440695
Genomic Variants (DGV)ETV3L [DGVbeta]
DECIPHERETV3L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisETV3L 
Mutations
ICGC Data PortalETV3L 
TCGA Data PortalETV3L 
Broad Tumor PortalETV3L
OASIS PortalETV3L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICETV3L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDETV3L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ETV3L
DgiDB (Drug Gene Interaction Database)ETV3L
DoCM (Curated mutations)ETV3L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ETV3L (select a term)
intoGenETV3L
Cancer3DETV3L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenETV3L
Genetic Testing Registry ETV3L
NextProtQ6ZN32 [Medical]
TSGene440695
GENETestsETV3L
Target ValidationETV3L
Huge Navigator ETV3L [HugePedia]
snp3D : Map Gene to Disease440695
BioCentury BCIQETV3L
ClinGenETV3L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440695
Chemical/Pharm GKB GenePA162385461
Clinical trialETV3L
Miscellaneous
canSAR (ICR)ETV3L (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineETV3L
EVEXETV3L
GoPubMedETV3L
iHOPETV3L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:32:58 CEST 2017

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