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EVI5 (ecotropic viral integration site 5)

Identity

Other namesEVI-5
NB4S
HGNC (Hugo) EVI5
LocusID (NCBI) 7813
Atlas_Id 40511
Location 1p22.1
Location_base_pair Starts at 92974253 and ends at 93257961 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C1RL (12p13.31) / EVI5 (1p22.1)C20orf194 (20p13) / EVI5 (1p22.1)EVI5 (1p22.1) / PEAK1 (15q24.3)
EVI5 (1p22.1) / RFWD2 (1q25.1)EVI5 (1p22.1) / TMEM26 (10q21.2)EVI5 (1p22.1) / TMEM87A (15q15.1)
KCNQ3 (8q24.22) / EVI5 (1p22.1)MED18 (1p35.3) / EVI5 (1p22.1)C20orf194 20p13 / EVI5 1p22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EVI5   3501
Cards
Entrez_Gene (NCBI)EVI5  7813  ecotropic viral integration site 5
AliasesEVI-5; NB4S
GeneCards (Weizmann)EVI5
Ensembl hg19 (Hinxton)ENSG00000067208 [Gene_View]  chr1:92974253-93257961 [Contig_View]  EVI5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000067208 [Gene_View]  chr1:92974253-93257961 [Contig_View]  EVI5 [Vega]
ICGC DataPortalENSG00000067208
TCGA cBioPortalEVI5
AceView (NCBI)EVI5
Genatlas (Paris)EVI5
WikiGenes7813
SOURCE (Princeton)EVI5
Genomic and cartography
GoldenPath hg19 (UCSC)EVI5  -     chr1:92974253-93257961 -  1p22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EVI5  -     1p22.1   [Description]    (hg38-Dec_2013)
EnsemblEVI5 - 1p22.1 [CytoView hg19]  EVI5 - 1p22.1 [CytoView hg38]
Mapping of homologs : NCBIEVI5 [Mapview hg19]  EVI5 [Mapview hg38]
OMIM602942   
Gene and transcription
Genbank (Entrez)AA725529 AB209513 AB449875 AF008915 BC141544
RefSeq transcript (Entrez)NM_001308248 NM_005665
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)EVI5
Cluster EST : UnigeneHs.594434 [ NCBI ]
CGAP (NCI)Hs.594434
Alternative Splicing GalleryENSG00000067208
Gene ExpressionEVI5 [ NCBI-GEO ]   EVI5 [ EBI - ARRAY_EXPRESS ]   EVI5 [ SEEK ]   EVI5 [ MEM ]
Gene Expression Viewer (FireBrowse)EVI5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7813
GTEX Portal (Tissue expression)EVI5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60447 (Uniprot)
NextProtO60447  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60447
Splice isoforms : SwissVarO60447 (Swissvar)
PhosPhoSitePlusO60447
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Evi5    Rab-GTPase-TBC_dom   
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
DMDM Disease mutations7813
Blocks (Seattle)EVI5
SuperfamilyO60447
Human Protein AtlasENSG00000067208
Peptide AtlasO60447
HPRD04249
IPIIPI01018995   IPI00029661   IPI00455432   
Protein Interaction databases
DIP (DOE-UCLA)O60447
IntAct (EBI)O60447
FunCoupENSG00000067208
BioGRIDEVI5
STRING (EMBL)EVI5
ZODIACEVI5
Ontologies - Pathways
QuickGOO60447
Ontology : AmiGOGTPase activator activity  protein binding  nucleus  Golgi apparatus  microtubule organizing center  spindle  cytosol  intracellular protein transport  cell cycle  multicellular organism development  cell proliferation  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  retrograde transport, endosome to Golgi  intracellular membrane-bounded organelle  cell division  activation of GTPase activity  regulation of cilium assembly  
Ontology : EGO-EBIGTPase activator activity  protein binding  nucleus  Golgi apparatus  microtubule organizing center  spindle  cytosol  intracellular protein transport  cell cycle  multicellular organism development  cell proliferation  endomembrane system  Rab GTPase binding  regulation of vesicle fusion  retrograde transport, endosome to Golgi  intracellular membrane-bounded organelle  cell division  activation of GTPase activity  regulation of cilium assembly  
NDEx Network
Atlas of Cancer Signalling NetworkEVI5
Wikipedia pathwaysEVI5
Orthology - Evolution
OrthoDB7813
GeneTree (enSembl)ENSG00000067208
Phylogenetic Trees/Animal Genes : TreeFamEVI5
Homologs : HomoloGeneEVI5
Homology/Alignments : Family Browser (UCSC)EVI5
Gene fusions - Rearrangements
Fusion: TCGAC20orf194 20p13 EVI5 1p22.1 LUAD
Polymorphisms : SNP, variants
NCBI Variation ViewerEVI5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EVI5
dbVarEVI5
ClinVarEVI5
1000_GenomesEVI5 
Exome Variant ServerEVI5
ExAC (Exome Aggregation Consortium)EVI5 (select the gene name)
Genetic variants : HAPMAP7813
Genomic Variants (DGV)EVI5 [DGVbeta]
Mutations
ICGC Data PortalEVI5 
TCGA Data PortalEVI5 
Broad Tumor PortalEVI5
OASIS PortalEVI5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEVI5 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EVI5
DgiDB (Drug Gene Interaction Database)EVI5
DoCM (Curated mutations)EVI5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EVI5 (select a term)
intoGenEVI5
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:92974253-93257961  ENSG00000067208
CONAN: Copy Number AnalysisEVI5 
Mutations and Diseases : HGMDEVI5
OMIM602942   
MedgenEVI5
Genetic Testing Registry EVI5
NextProtO60447 [Medical]
TSGene7813
GENETestsEVI5
Huge Navigator EVI5 [HugePedia]
snp3D : Map Gene to Disease7813
BioCentury BCIQEVI5
ClinGenEVI5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7813
Chemical/Pharm GKB GenePA27915
Clinical trialEVI5
Miscellaneous
canSAR (ICR)EVI5 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEVI5
EVEXEVI5
GoPubMedEVI5
iHOPEVI5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:01:57 CEST 2016

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