Atlas of Genetics and Cytogenetics in Oncology and Haematology


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EVI5 (ecotropic viral integration site 5)

Identity

Other namesNB4S
HGNC (Hugo) EVI5
LocusID (NCBI) 7813
Location 1p22.1
Location_base_pair Starts at 92974253 and ends at 93257961 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EVI5   3501
Cards
Entrez_Gene (NCBI)EVI5  7813  ecotropic viral integration site 5
GeneCards (Weizmann)EVI5
Ensembl (Hinxton)ENSG00000067208 [Gene_View]  chr1:92974253-93257961 [Contig_View]  EVI5 [Vega]
ICGC DataPortalENSG00000067208
cBioPortalEVI5
AceView (NCBI)EVI5
Genatlas (Paris)EVI5
WikiGenes7813
SOURCE (Princeton)NM_005665
Genomic and cartography
GoldenPath (UCSC)EVI5  -  1p22.1   chr1:92974253-93257961 -  1p22.1   [Description]    (hg19-Feb_2009)
EnsemblEVI5 - 1p22.1 [CytoView]
Mapping of homologs : NCBIEVI5 [Mapview]
OMIM602942   
Gene and transcription
Genbank (Entrez)AB209513 AB449875 AF008915 BC141544 BC156793
RefSeq transcript (Entrez)NM_005665
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838589 NW_004929290
Consensus coding sequences : CCDS (NCBI)EVI5
Cluster EST : UnigeneHs.594434 [ NCBI ]
CGAP (NCI)Hs.594434
Alternative Splicing : Fast-db (Paris)GSHG0002259
Alternative Splicing GalleryENSG00000067208
Gene ExpressionEVI5 [ NCBI-GEO ]     EVI5 [ SEEK ]   EVI5 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60447 (Uniprot)
NextProtO60447  [Medical]
With graphics : InterProO60447
Splice isoforms : SwissVarO60447 (Swissvar)
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom [organisation]  
Related proteins : CluSTrO60447
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
DMDM Disease mutations7813
Blocks (Seattle)O60447
Human Protein AtlasENSG00000067208 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO60447
HPRD04249
IPIIPI01018995   IPI00029661   IPI00455432   
Protein Interaction databases
DIP (DOE-UCLA)O60447
IntAct (EBI)O60447
FunCoupENSG00000067208
BioGRIDEVI5
InParanoidO60447
Interologous Interaction database O60447
IntegromeDBEVI5
STRING (EMBL)EVI5
Ontologies - Pathways
Ontology : AmiGORab GTPase activator activity  protein binding  nucleus  Golgi apparatus  microtubule organizing center  spindle  cell cycle  multicellular organismal development  cell proliferation  positive regulation of Rab GTPase activity  intracellular membrane-bounded organelle  cell division  
Ontology : EGO-EBIRab GTPase activator activity  protein binding  nucleus  Golgi apparatus  microtubule organizing center  spindle  cell cycle  multicellular organismal development  cell proliferation  positive regulation of Rab GTPase activity  intracellular membrane-bounded organelle  cell division  
Protein Interaction DatabaseEVI5
Wikipedia pathwaysEVI5
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)EVI5
snp3D : Map Gene to Disease7813
SNP (GeneSNP Utah)EVI5
SNP : HGBaseEVI5
Genetic variants : HAPMAPEVI5
Exome VariantEVI5
1000_GenomesEVI5 
ICGC programENSG00000067208 
Somatic Mutations in Cancer : COSMICEVI5 
CONAN: Copy Number AnalysisEVI5 
Mutations and Diseases : HGMDEVI5
Genomic VariantsEVI5  EVI5 [DGVbeta]
dbVarEVI5
ClinVarEVI5
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM602942   
MedgenEVI5
GENETestsEVI5
Disease Genetic AssociationEVI5
Huge Navigator EVI5 [HugePedia]  EVI5 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneEVI5
Homology/Alignments : Family Browser (UCSC)EVI5
Phylogenetic Trees/Animal Genes : TreeFamEVI5
Chemical/Protein Interactions : CTD7813
Chemical/Pharm GKB GenePA27915
Clinical trialEVI5
Cancer Resource (Charite)ENSG00000067208
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
CoreMineEVI5
iHOPEVI5
OncoSearchEVI5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:31:11 CEST 2014

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