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EVI5 (ecotropic viral integration site 5)

Identity

Other namesEVI-5
NB4S
HGNC (Hugo) EVI5
LocusID (NCBI) 7813
Atlas_Id 40511
Location 1p22.1
Location_base_pair Starts at 92974253 and ends at 93257961 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EVI5   3501
Cards
Entrez_Gene (NCBI)EVI5  7813  ecotropic viral integration site 5
GeneCards (Weizmann)EVI5
Ensembl hg19 (Hinxton)ENSG00000067208 [Gene_View]  chr1:92974253-93257961 [Contig_View]  EVI5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000067208 [Gene_View]  chr1:92974253-93257961 [Contig_View]  EVI5 [Vega]
ICGC DataPortalENSG00000067208
TCGA cBioPortalEVI5
AceView (NCBI)EVI5
Genatlas (Paris)EVI5
WikiGenes7813
SOURCE (Princeton)EVI5
Genomic and cartography
GoldenPath hg19 (UCSC)EVI5  -     chr1:92974253-93257961 -  1p22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EVI5  -     1p22.1   [Description]    (hg38-Dec_2013)
EnsemblEVI5 - 1p22.1 [CytoView hg19]  EVI5 - 1p22.1 [CytoView hg38]
Mapping of homologs : NCBIEVI5 [Mapview hg19]  EVI5 [Mapview hg38]
OMIM602942   
Gene and transcription
Genbank (Entrez)AA725529 AB209513 AB449875 AF008915 BC141544
RefSeq transcript (Entrez)NM_001308248 NM_005665
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)EVI5
Cluster EST : UnigeneHs.594434 [ NCBI ]
CGAP (NCI)Hs.594434
Alternative Splicing : Fast-db (Paris)GSHG0002259
Alternative Splicing GalleryENSG00000067208
Gene ExpressionEVI5 [ NCBI-GEO ]     EVI5 [ SEEK ]   EVI5 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60447 (Uniprot)
NextProtO60447  [Medical]  [Publications]
With graphics : InterProO60447
Splice isoforms : SwissVarO60447 (Swissvar)
Domaine pattern : Prosite (Expaxy)TBC_RABGAP (PS50086)   
Domains : Interpro (EBI)Rab-GTPase-TBC_dom   
Related proteins : CluSTrO60447
Domain families : Pfam (Sanger)RabGAP-TBC (PF00566)   
Domain families : Pfam (NCBI)pfam00566   
Domain families : Smart (EMBL)TBC (SM00164)  
DMDM Disease mutations7813
Blocks (Seattle)O60447
Human Protein AtlasENSG00000067208
Peptide AtlasO60447
HPRD04249
IPIIPI01018995   IPI00029661   IPI00455432   
Protein Interaction databases
DIP (DOE-UCLA)O60447
IntAct (EBI)O60447
FunCoupENSG00000067208
BioGRIDEVI5
IntegromeDBEVI5
STRING (EMBL)EVI5
Ontologies - Pathways
QuickGOO60447
Ontology : AmiGOGTPase activator activity  protein binding  nucleus  Golgi apparatus  microtubule organizing center  spindle  cytosol  cell cycle  multicellular organismal development  cell proliferation  Rab GTPase binding  retrograde transport, endosome to Golgi  intracellular membrane-bounded organelle  positive regulation of GTPase activity  cell division  regulation of cilium assembly  
Ontology : EGO-EBIGTPase activator activity  protein binding  nucleus  Golgi apparatus  microtubule organizing center  spindle  cytosol  cell cycle  multicellular organismal development  cell proliferation  Rab GTPase binding  retrograde transport, endosome to Golgi  intracellular membrane-bounded organelle  positive regulation of GTPase activity  cell division  regulation of cilium assembly  
Protein Interaction DatabaseEVI5
DoCM (Curated mutations)EVI5
Wikipedia pathwaysEVI5
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerEVI5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EVI5
dbVarEVI5
ClinVarEVI5
1000_GenomesEVI5 
Exome Variant ServerEVI5
SNP (GeneSNP Utah)EVI5
SNP : HGBaseEVI5
Genetic variants : HAPMAPEVI5
Genomic Variants (DGV)EVI5 [DGVbeta]
Mutations
ICGC Data PortalEVI5 
TCGA Data PortalEVI5 
Tumor PortalEVI5
Somatic Mutations in Cancer : COSMICEVI5 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:92974253-93257961
CONAN: Copy Number AnalysisEVI5 
Mutations and Diseases : HGMDEVI5
OMIM602942   
MedgenEVI5
NextProtO60447 [Medical]
GENETestsEVI5
Disease Genetic AssociationEVI5
Huge Navigator EVI5 [HugePedia]  EVI5 [HugeCancerGEM]
snp3D : Map Gene to Disease7813
DGIdb (Drug Gene Interaction db)EVI5
BioCentury BCIQEVI5
General knowledge
Homologs : HomoloGeneEVI5
Homology/Alignments : Family Browser (UCSC)EVI5
Phylogenetic Trees/Animal Genes : TreeFamEVI5
Chemical/Protein Interactions : CTD7813
Chemical/Pharm GKB GenePA27915
Clinical trialEVI5
Cancer Resource (Charite)ENSG00000067208
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
CoreMineEVI5
GoPubMedEVI5
iHOPEVI5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jun 27 11:32:02 CEST 2015

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