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EVX1 (even-skipped homeobox 1)

Identity

Alias_nameseve
Other aliasEVX-1
HGNC (Hugo) EVX1
LocusID (NCBI) 2128
Atlas_Id 54293
Location 7p15.2  [Link to chromosome band 7p15]
Location_base_pair Starts at 27242545 and ends at 27247819 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RUNX1 (21q22.12) / EVX1 (7p15.2)SYNRG (17q12) / EVX1 (7p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Ensembl hg19 (Hinxton)
Nomenclature
HGNC (Hugo)EVX1   3506
Cards
Entrez_Gene (NCBI)EVX1  2128  even-skipped homeobox 1
AliasesEVX-1
GeneCards (Weizmann)EVX1ENSG00000106038 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106038 [Gene_View]  chr7:27242545-27247819 [Contig_View]  EVX1 [Vega]
ICGC DataPortalENSG00000106038
TCGA cBioPortalEVX1
AceView (NCBI)EVX1
Genatlas (Paris)EVX1
WikiGenes2128
SOURCE (Princeton)EVX1
Genetics Home Reference (NIH)EVX1
Genomic and cartography
GoldenPath hg38 (UCSC)EVX1  -     chr7:27242545-27247819 +  7p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EVX1  -     7p15.2   [Description]    (hg19-Feb_2009)
EnsemblEVX1 - 7p15.2 [CytoView hg19]  EVX1 - 7p15.2 [CytoView hg38]
Mapping of homologs : NCBIEVX1 [Mapview hg19]  EVX1 [Mapview hg38]
OMIM142996   
Gene and transcription
Genbank (Entrez)AK298822 AK299188 AK314155 BC152723 X60655
RefSeq transcript (Entrez)NM_001304519 NM_001304520 NM_001989
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EVX1
Cluster EST : UnigeneHs.369879 [ NCBI ]
CGAP (NCI)Hs.369879
Alternative Splicing GalleryENSG00000106038
Gene ExpressionEVX1 [ NCBI-GEO ]   EVX1 [ EBI - ARRAY_EXPRESS ]   EVX1 [ SEEK ]   EVX1 [ MEM ]
Gene Expression Viewer (FireBrowse)EVX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2128
GTEX Portal (Tissue expression)EVX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49640   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49640  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49640
Splice isoforms : SwissVarP49640
PhosPhoSitePlusP49640
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    Homeobox_metazoa   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)EVX1
DMDM Disease mutations2128
Blocks (Seattle)EVX1
SuperfamilyP49640
Human Protein AtlasENSG00000106038
Peptide AtlasP49640
HPRD00876
IPIIPI00027702   IPI00946777   IPI00945777   
Protein Interaction databases
DIP (DOE-UCLA)P49640
IntAct (EBI)P49640
FunCoupENSG00000106038
BioGRIDEVX1
STRING (EMBL)EVX1
ZODIACEVX1
Ontologies - Pathways
QuickGOP49640
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  nucleoplasm  embryo development ending in birth or egg hatching  regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  nucleoplasm  embryo development ending in birth or egg hatching  regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkEVX1
Atlas of Cancer Signalling NetworkEVX1
Wikipedia pathwaysEVX1
Orthology - Evolution
OrthoDB2128
GeneTree (enSembl)ENSG00000106038
Phylogenetic Trees/Animal Genes : TreeFamEVX1
HOVERGENP49640
HOGENOMP49640
Homologs : HomoloGeneEVX1
Homology/Alignments : Family Browser (UCSC)EVX1
Gene fusions - Rearrangements
Fusion : MitelmanRUNX1/EVX1 [21q22.12/7p15.2]  [t(7;21)(p15;q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEVX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EVX1
dbVarEVX1
ClinVarEVX1
1000_GenomesEVX1 
Exome Variant ServerEVX1
ExAC (Exome Aggregation Consortium)EVX1 (select the gene name)
Genetic variants : HAPMAP2128
Genomic Variants (DGV)EVX1 [DGVbeta]
DECIPHEREVX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEVX1 
Mutations
ICGC Data PortalEVX1 
TCGA Data PortalEVX1 
Broad Tumor PortalEVX1
OASIS PortalEVX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEVX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEVX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EVX1
DgiDB (Drug Gene Interaction Database)EVX1
DoCM (Curated mutations)EVX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EVX1 (select a term)
intoGenEVX1
Cancer3DEVX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142996   
Orphanet
MedgenEVX1
Genetic Testing Registry EVX1
NextProtP49640 [Medical]
TSGene2128
GENETestsEVX1
Target ValidationEVX1
Huge Navigator EVX1 [HugePedia]
snp3D : Map Gene to Disease2128
BioCentury BCIQEVX1
ClinGenEVX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2128
Chemical/Pharm GKB GenePA27919
Clinical trialEVX1
Miscellaneous
canSAR (ICR)EVX1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEVX1
EVEXEVX1
GoPubMedEVX1
iHOPEVX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:07:24 CEST 2017

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