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EXD1 (exonuclease 3'-5' domain containing 1)

Identity

Alias_namesEXDL1
exonuclease 3'-5' domain-like 1
Alias_symbol (synonym)MGC33637
Other alias
HGNC (Hugo) EXD1
LocusID (NCBI) 161829
Atlas_Id 62940
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 41474931 and ends at 41522955 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EXD1 (15q15.1) / RFWD2 (1q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EXD1   28507
Cards
Entrez_Gene (NCBI)EXD1  161829  exonuclease 3'-5' domain containing 1
AliasesEXDL1
GeneCards (Weizmann)EXD1
Ensembl hg19 (Hinxton)ENSG00000178997 [Gene_View]  chr15:41474931-41522955 [Contig_View]  EXD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178997 [Gene_View]  chr15:41474931-41522955 [Contig_View]  EXD1 [Vega]
ICGC DataPortalENSG00000178997
TCGA cBioPortalEXD1
AceView (NCBI)EXD1
Genatlas (Paris)EXD1
WikiGenes161829
SOURCE (Princeton)EXD1
Genetics Home Reference (NIH)EXD1
Genomic and cartography
GoldenPath hg19 (UCSC)EXD1  -     chr15:41474931-41522955 -  15q15.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EXD1  -     15q15.1   [Description]    (hg38-Dec_2013)
EnsemblEXD1 - 15q15.1 [CytoView hg19]  EXD1 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIEXD1 [Mapview hg19]  EXD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123414 AK292524 AK302864 BC030628 DC404441
RefSeq transcript (Entrez)NM_001286441 NM_152596
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)EXD1
Cluster EST : UnigeneHs.307999 [ NCBI ]
CGAP (NCI)Hs.307999
Alternative Splicing GalleryENSG00000178997
Gene ExpressionEXD1 [ NCBI-GEO ]   EXD1 [ EBI - ARRAY_EXPRESS ]   EXD1 [ SEEK ]   EXD1 [ MEM ]
Gene Expression Viewer (FireBrowse)EXD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161829
GTEX Portal (Tissue expression)EXD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHP7
Splice isoforms : SwissVarQ8NHP7
PhosPhoSitePlusQ8NHP7
Domains : Interpro (EBI)3'-5'_exonuclease_dom    RNaseH-like_dom   
Domain families : Pfam (Sanger)DNA_pol_A_exo1 (PF01612)   
Domain families : Pfam (NCBI)pfam01612   
Domain families : Smart (EMBL)35EXOc (SM00474)  
Conserved Domain (NCBI)EXD1
DMDM Disease mutations161829
Blocks (Seattle)EXD1
SuperfamilyQ8NHP7
Human Protein AtlasENSG00000178997
Peptide AtlasQ8NHP7
HPRD14571
IPIIPI01011120   IPI00446611   IPI00169284   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHP7
IntAct (EBI)Q8NHP7
FunCoupENSG00000178997
BioGRIDEXD1
STRING (EMBL)EXD1
ZODIACEXD1
Ontologies - Pathways
QuickGOQ8NHP7
Ontology : AmiGOnucleic acid binding  protein binding  3'-5' exonuclease activity  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBInucleic acid binding  protein binding  3'-5' exonuclease activity  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkEXD1
Atlas of Cancer Signalling NetworkEXD1
Wikipedia pathwaysEXD1
Orthology - Evolution
OrthoDB161829
GeneTree (enSembl)ENSG00000178997
Phylogenetic Trees/Animal Genes : TreeFamEXD1
HOVERGENQ8NHP7
HOGENOMQ8NHP7
Homologs : HomoloGeneEXD1
Homology/Alignments : Family Browser (UCSC)EXD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEXD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EXD1
dbVarEXD1
ClinVarEXD1
1000_GenomesEXD1 
Exome Variant ServerEXD1
ExAC (Exome Aggregation Consortium)EXD1 (select the gene name)
Genetic variants : HAPMAP161829
Genomic Variants (DGV)EXD1 [DGVbeta]
DECIPHER (Syndromes)15:41474931-41522955  ENSG00000178997
CONAN: Copy Number AnalysisEXD1 
Mutations
ICGC Data PortalEXD1 
TCGA Data PortalEXD1 
Broad Tumor PortalEXD1
OASIS PortalEXD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEXD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEXD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EXD1
DgiDB (Drug Gene Interaction Database)EXD1
DoCM (Curated mutations)EXD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EXD1 (select a term)
intoGenEXD1
Cancer3DEXD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEXD1
Genetic Testing Registry EXD1
NextProtQ8NHP7 [Medical]
TSGene161829
GENETestsEXD1
Huge Navigator EXD1 [HugePedia]
snp3D : Map Gene to Disease161829
BioCentury BCIQEXD1
ClinGenEXD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161829
Chemical/Pharm GKB GenePA164719420
Clinical trialEXD1
Miscellaneous
canSAR (ICR)EXD1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEXD1
EVEXEXD1
GoPubMedEXD1
iHOPEXD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:03:14 CET 2017

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