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EXD3 (exonuclease 3'-5' domain containing 3)

Identity

Alias_symbol (synonym)LOC54932
FLJ20433
mut-7
Other alias
HGNC (Hugo) EXD3
LocusID (NCBI) 54932
Atlas_Id 62942
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 140260597 and ends at 140317714 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CARD8 (19q13.33) / EXD3 (9q34.3)EXD3 (9q34.3) / CACNA1B (9q34.3)EXD3 (9q34.3) / PNPLA7 (9q34.3)
EXD3 (9q34.3) / ZNF276 (16q24.3)TPRN (9q34.3) / EXD3 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EXD3   26023
Cards
Entrez_Gene (NCBI)EXD3  54932  exonuclease 3'-5' domain containing 3
Aliasesmut-7
GeneCards (Weizmann)EXD3
Ensembl hg19 (Hinxton)ENSG00000187609 [Gene_View]  chr9:140260597-140317714 [Contig_View]  EXD3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187609 [Gene_View]  chr9:140260597-140317714 [Contig_View]  EXD3 [Vega]
ICGC DataPortalENSG00000187609
TCGA cBioPortalEXD3
AceView (NCBI)EXD3
Genatlas (Paris)EXD3
WikiGenes54932
SOURCE (Princeton)EXD3
Genetics Home Reference (NIH)EXD3
Genomic and cartography
GoldenPath hg19 (UCSC)EXD3  -     chr9:140260597-140317714 -  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EXD3  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblEXD3 - 9q34.3 [CytoView hg19]  EXD3 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIEXD3 [Mapview hg19]  EXD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB061798 AI682614 AK000440 AK055004 AK091390
RefSeq transcript (Entrez)NM_001286823 NM_017820
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)EXD3
Cluster EST : UnigeneHs.721419 [ NCBI ]
CGAP (NCI)Hs.721419
Alternative Splicing GalleryENSG00000187609
Gene ExpressionEXD3 [ NCBI-GEO ]   EXD3 [ EBI - ARRAY_EXPRESS ]   EXD3 [ SEEK ]   EXD3 [ MEM ]
Gene Expression Viewer (FireBrowse)EXD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54932
GTEX Portal (Tissue expression)EXD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NX53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NX53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NX53
Splice isoforms : SwissVarQ9NX53
PhosPhoSitePlusQ9NX53
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EXD3
DMDM Disease mutations54932
Blocks (Seattle)EXD3
SuperfamilyQ9NX53
Human Protein AtlasENSG00000187609
Peptide AtlasQ9NX53
HPRD07906
IPIIPI00413242   IPI00884892   IPI00885207   IPI00884936   IPI00015857   IPI00978692   IPI00976717   IPI00980218   IPI00977437   
Protein Interaction databases
DIP (DOE-UCLA)Q9NX53
IntAct (EBI)Q9NX53
FunCoupENSG00000187609
BioGRIDEXD3
STRING (EMBL)EXD3
ZODIACEXD3
Ontologies - Pathways
QuickGOQ9NX53
Ontology : AmiGOnucleic acid binding  protein binding  nucleus  cytoplasm  3'-5' exonuclease activity  metal ion binding  nucleic acid phosphodiester bond hydrolysis  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBInucleic acid binding  protein binding  nucleus  cytoplasm  3'-5' exonuclease activity  metal ion binding  nucleic acid phosphodiester bond hydrolysis  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkEXD3
Atlas of Cancer Signalling NetworkEXD3
Wikipedia pathwaysEXD3
Orthology - Evolution
OrthoDB54932
GeneTree (enSembl)ENSG00000187609
Phylogenetic Trees/Animal Genes : TreeFamEXD3
HOVERGENQ9NX53
HOGENOMQ9NX53
Homologs : HomoloGeneEXD3
Homology/Alignments : Family Browser (UCSC)EXD3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEXD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EXD3
dbVarEXD3
ClinVarEXD3
1000_GenomesEXD3 
Exome Variant ServerEXD3
ExAC (Exome Aggregation Consortium)EXD3 (select the gene name)
Genetic variants : HAPMAP54932
Genomic Variants (DGV)EXD3 [DGVbeta]
DECIPHER (Syndromes)9:140260597-140317714  ENSG00000187609
CONAN: Copy Number AnalysisEXD3 
Mutations
ICGC Data PortalEXD3 
TCGA Data PortalEXD3 
Broad Tumor PortalEXD3
OASIS PortalEXD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEXD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEXD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EXD3
DgiDB (Drug Gene Interaction Database)EXD3
DoCM (Curated mutations)EXD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EXD3 (select a term)
intoGenEXD3
Cancer3DEXD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEXD3
Genetic Testing Registry EXD3
NextProtQ9NX53 [Medical]
TSGene54932
GENETestsEXD3
Huge Navigator EXD3 [HugePedia]
snp3D : Map Gene to Disease54932
BioCentury BCIQEXD3
ClinGenEXD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54932
Chemical/Pharm GKB GenePA164719422
Clinical trialEXD3
Miscellaneous
canSAR (ICR)EXD3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEXD3
EVEXEXD3
GoPubMedEXD3
iHOPEXD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:03:15 CET 2017

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