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EXOC3-AS1 (EXOC3 antisense RNA 1)

Identity

Alias_namesC5orf55
chromosome 5 open reading frame 55
Other alias
HGNC (Hugo) EXOC3-AS1
LocusID (NCBI) 116349
Atlas_Id 76819
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 441528 and ends at 443095 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ENPP2 (8q24.12) / EXOC3-AS1 (5p15.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EXOC3-AS1   25175
Cards
Entrez_Gene (NCBI)EXOC3-AS1  116349  EXOC3 antisense RNA 1
AliasesC5orf55
GeneCards (Weizmann)EXOC3-AS1
Ensembl hg19 (Hinxton)ENSG00000221990 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221990 [Gene_View]  chr5:441528-443095 [Contig_View]  EXOC3-AS1 [Vega]
ICGC DataPortalENSG00000221990
TCGA cBioPortalEXOC3-AS1
AceView (NCBI)EXOC3-AS1
Genatlas (Paris)EXOC3-AS1
WikiGenes116349
SOURCE (Princeton)EXOC3-AS1
Genetics Home Reference (NIH)EXOC3-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)EXOC3-AS1  -     chr5:441528-443095 -  5p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EXOC3-AS1  -     5p15.33   [Description]    (hg19-Feb_2009)
EnsemblEXOC3-AS1 - 5p15.33 [CytoView hg19]  EXOC3-AS1 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBIEXOC3-AS1 [Mapview hg19]  EXOC3-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC014011 BC029796 BM681006 DT217877
RefSeq transcript (Entrez)NM_138464
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EXOC3-AS1
Cluster EST : UnigeneHs.446702 [ NCBI ]
CGAP (NCI)Hs.446702
Alternative Splicing GalleryENSG00000221990
Gene ExpressionEXOC3-AS1 [ NCBI-GEO ]   EXOC3-AS1 [ EBI - ARRAY_EXPRESS ]   EXOC3-AS1 [ SEEK ]   EXOC3-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)EXOC3-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116349
GTEX Portal (Tissue expression)EXOC3-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2X6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2X6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2X6
Splice isoforms : SwissVarQ8N2X6
PhosPhoSitePlusQ8N2X6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EXOC3-AS1
DMDM Disease mutations116349
Blocks (Seattle)EXOC3-AS1
SuperfamilyQ8N2X6
Human Protein AtlasENSG00000221990
Peptide AtlasQ8N2X6
IPIIPI00401081   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2X6
IntAct (EBI)Q8N2X6
FunCoupENSG00000221990
BioGRIDEXOC3-AS1
STRING (EMBL)EXOC3-AS1
ZODIACEXOC3-AS1
Ontologies - Pathways
QuickGOQ8N2X6
Ontology : AmiGOprotein binding  extracellular region  
Ontology : EGO-EBIprotein binding  extracellular region  
NDEx NetworkEXOC3-AS1
Atlas of Cancer Signalling NetworkEXOC3-AS1
Wikipedia pathwaysEXOC3-AS1
Orthology - Evolution
OrthoDB116349
GeneTree (enSembl)ENSG00000221990
Phylogenetic Trees/Animal Genes : TreeFamEXOC3-AS1
HOVERGENQ8N2X6
HOGENOMQ8N2X6
Homologs : HomoloGeneEXOC3-AS1
Homology/Alignments : Family Browser (UCSC)EXOC3-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEXOC3-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EXOC3-AS1
dbVarEXOC3-AS1
ClinVarEXOC3-AS1
1000_GenomesEXOC3-AS1 
Exome Variant ServerEXOC3-AS1
ExAC (Exome Aggregation Consortium)EXOC3-AS1 (select the gene name)
Genetic variants : HAPMAP116349
Genomic Variants (DGV)EXOC3-AS1 [DGVbeta]
DECIPHEREXOC3-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEXOC3-AS1 
Mutations
ICGC Data PortalEXOC3-AS1 
TCGA Data PortalEXOC3-AS1 
Broad Tumor PortalEXOC3-AS1
OASIS PortalEXOC3-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEXOC3-AS1
BioMutasearch EXOC3-AS1
DgiDB (Drug Gene Interaction Database)EXOC3-AS1
DoCM (Curated mutations)EXOC3-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EXOC3-AS1 (select a term)
intoGenEXOC3-AS1
Cancer3DEXOC3-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEXOC3-AS1
Genetic Testing Registry EXOC3-AS1
NextProtQ8N2X6 [Medical]
TSGene116349
GENETestsEXOC3-AS1
Target ValidationEXOC3-AS1
Huge Navigator EXOC3-AS1 [HugePedia]
snp3D : Map Gene to Disease116349
BioCentury BCIQEXOC3-AS1
ClinGenEXOC3-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116349
Chemical/Pharm GKB GenePA164717357
Clinical trialEXOC3-AS1
Miscellaneous
canSAR (ICR)EXOC3-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEXOC3-AS1
EVEXEXOC3-AS1
GoPubMedEXOC3-AS1
iHOPEXOC3-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:47:32 CEST 2017

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