Atlas of Genetics and Cytogenetics in Oncology and Haematology


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EXOC3 (exocyst complex component 3)

Identity

Other namesSEC6
SEC6L1
Sec6p
HGNC (Hugo) EXOC3
LocusID (NCBI) 11336
Location 5p15.33
Location_base_pair Starts at 443334 and ends at 467409 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EXOC3   30378
Cards
Entrez_Gene (NCBI)EXOC3  11336  exocyst complex component 3
GeneCards (Weizmann)EXOC3
Ensembl (Hinxton)ENSG00000180104 [Gene_View]  chr5:443334-467409 [Contig_View]  EXOC3 [Vega]
AceView (NCBI)EXOC3
Genatlas (Paris)EXOC3
WikiGenes11336
SOURCE (Princeton)NM_007277
Genomic and cartography
GoldenPath (UCSC)EXOC3  -  5p15.33   chr5:443334-467409 +  5p15.33   [Description]    (hg19-Feb_2009)
EnsemblEXOC3 - 5p15.33 [CytoView]
Mapping of homologs : NCBIEXOC3 [Mapview]
OMIM608186   
Gene and transcription
Genbank (Entrez)AA487875 AF055006 AI628051 AK074086 AK131103
RefSeq transcript (Entrez)NM_007277
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NT_006576 NW_001838923 NW_004929321
Consensus coding sequences : CCDS (NCBI)EXOC3
Cluster EST : UnigeneHs.481464 [ NCBI ]
CGAP (NCI)Hs.481464
Alternative Splicing : Fast-db (Paris)GSHG0023726
Alternative Splicing GalleryENSG00000180104
Gene ExpressionEXOC3 [ NCBI-GEO ]     EXOC3 [ SEEK ]   EXOC3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60645 (Uniprot)
NextProtO60645  [Medical]
With graphics : InterProO60645
Splice isoforms : SwissVarO60645 (Swissvar)
Domains : Interpro (EBI)Sec6   
Related proteins : CluSTrO60645
Domain families : Pfam (Sanger)Sec6 (PF06046)   
Domain families : Pfam (NCBI)pfam06046   
DMDM Disease mutations11336
Blocks (Seattle)O60645
Human Protein AtlasENSG00000180104
Peptide AtlasO60645
HPRD09738
IPIIPI00157734   IPI00219954   IPI00967947   IPI00966180   IPI00966432   
Protein Interaction databases
DIP (DOE-UCLA)O60645
IntAct (EBI)O60645
FunCoupENSG00000180104
BioGRIDEXOC3
InParanoidO60645
Interologous Interaction database O60645
IntegromeDBEXOC3
STRING (EMBL)EXOC3
Ontologies - Pathways
Ontology : AmiGOexocyst  protein binding  exocytosis  protein transport  secretory granule membrane  cellular protein metabolic process  
Ontology : EGO-EBIexocyst  protein binding  exocytosis  protein transport  secretory granule membrane  cellular protein metabolic process  
Pathways : KEGGTight junction   
REACTOMEEXOC3
Protein Interaction DatabaseEXOC3
Wikipedia pathwaysEXOC3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)EXOC3
SNP (GeneSNP Utah)EXOC3
SNP : HGBaseEXOC3
Genetic variants : HAPMAPEXOC3
1000_GenomesEXOC3 
ICGC programENSG00000180104 
Somatic Mutations in Cancer : COSMICEXOC3 
CONAN: Copy Number AnalysisEXOC3 
Mutations and Diseases : HGMDEXOC3
OMIM608186   
GENETestsEXOC3
Disease Genetic AssociationEXOC3
Huge Navigator EXOC3 [HugePedia]  EXOC3 [HugeCancerGEM]
Genomic VariantsEXOC3  EXOC3 [DGVbeta]
Exome VariantEXOC3
dbVarEXOC3
ClinVarEXOC3
snp3D : Map Gene to Disease11336
General knowledge
Homologs : HomoloGeneEXOC3
Homology/Alignments : Family Browser (UCSC)EXOC3
Phylogenetic Trees/Animal Genes : TreeFamEXOC3
Chemical/Protein Interactions : CTD11336
Chemical/Pharm GKB GenePA134869816
Clinical trialEXOC3
Cancer Resource (Charite)ENSG00000180104
Other databases
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
CoreMineEXOC3
iHOPEXOC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:10:43 CEST 2014

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