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EXOC3 (exocyst complex component 3)

Identity

Other namesSEC6
SEC6L1
Sec6p
HGNC (Hugo) EXOC3
LocusID (NCBI) 11336
Atlas_Id 42243
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 443334 and ends at 467409 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CEP72 (5p15.33) / EXOC3 (5p15.33)EXOC3 (5p15.33) / ERGIC1 (5q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EXOC3   30378
Cards
Entrez_Gene (NCBI)EXOC3  11336  exocyst complex component 3
AliasesSEC6; SEC6L1; Sec6p
GeneCards (Weizmann)EXOC3
Ensembl hg19 (Hinxton)ENSG00000180104 [Gene_View]  chr5:443334-467409 [Contig_View]  EXOC3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180104 [Gene_View]  chr5:443334-467409 [Contig_View]  EXOC3 [Vega]
ICGC DataPortalENSG00000180104
TCGA cBioPortalEXOC3
AceView (NCBI)EXOC3
Genatlas (Paris)EXOC3
WikiGenes11336
SOURCE (Princeton)EXOC3
Genomic and cartography
GoldenPath hg19 (UCSC)EXOC3  -     chr5:443334-467409 +  5p15.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EXOC3  -     5p15.33   [Description]    (hg38-Dec_2013)
EnsemblEXOC3 - 5p15.33 [CytoView hg19]  EXOC3 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBIEXOC3 [Mapview hg19]  EXOC3 [Mapview hg38]
OMIM608186   
Gene and transcription
Genbank (Entrez)AA487875 AF055006 AI628051 AK074086 AK131103
RefSeq transcript (Entrez)NM_007277
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)EXOC3
Cluster EST : UnigeneHs.481464 [ NCBI ]
CGAP (NCI)Hs.481464
Alternative Splicing GalleryENSG00000180104
Gene ExpressionEXOC3 [ NCBI-GEO ]   EXOC3 [ EBI - ARRAY_EXPRESS ]   EXOC3 [ SEEK ]   EXOC3 [ MEM ]
Gene Expression Viewer (FireBrowse)EXOC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11336
GTEX Portal (Tissue expression)EXOC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60645 (Uniprot)
NextProtO60645  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60645
Splice isoforms : SwissVarO60645 (Swissvar)
PhosPhoSitePlusO60645
Domains : Interpro (EBI)Sec6   
Domain families : Pfam (Sanger)Sec6 (PF06046)   
Domain families : Pfam (NCBI)pfam06046   
DMDM Disease mutations11336
Blocks (Seattle)EXOC3
SuperfamilyO60645
Human Protein AtlasENSG00000180104
Peptide AtlasO60645
HPRD09738
IPIIPI00157734   IPI00219954   IPI00967947   IPI00966180   IPI00966432   
Protein Interaction databases
DIP (DOE-UCLA)O60645
IntAct (EBI)O60645
FunCoupENSG00000180104
BioGRIDEXOC3
STRING (EMBL)EXOC3
ZODIACEXOC3
Ontologies - Pathways
QuickGOO60645
Ontology : AmiGOexocyst  SNARE binding  protein binding  cytosol  exocytosis  protein transport  secretory granule membrane  exocyst localization  
Ontology : EGO-EBIexocyst  SNARE binding  protein binding  cytosol  exocytosis  protein transport  secretory granule membrane  exocyst localization  
Pathways : KEGGTight junction   
NDEx Network
Atlas of Cancer Signalling NetworkEXOC3
Wikipedia pathwaysEXOC3
Orthology - Evolution
OrthoDB11336
GeneTree (enSembl)ENSG00000180104
Phylogenetic Trees/Animal Genes : TreeFamEXOC3
Homologs : HomoloGeneEXOC3
Homology/Alignments : Family Browser (UCSC)EXOC3
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerEXOC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EXOC3
dbVarEXOC3
ClinVarEXOC3
1000_GenomesEXOC3 
Exome Variant ServerEXOC3
ExAC (Exome Aggregation Consortium)EXOC3 (select the gene name)
Genetic variants : HAPMAP11336
Genomic Variants (DGV)EXOC3 [DGVbeta]
Mutations
ICGC Data PortalEXOC3 
TCGA Data PortalEXOC3 
Broad Tumor PortalEXOC3
OASIS PortalEXOC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEXOC3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EXOC3
DgiDB (Drug Gene Interaction Database)EXOC3
DoCM (Curated mutations)EXOC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EXOC3 (select a term)
intoGenEXOC3
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)5:443334-467409  ENSG00000180104
CONAN: Copy Number AnalysisEXOC3 
Mutations and Diseases : HGMDEXOC3
OMIM608186   
MedgenEXOC3
Genetic Testing Registry EXOC3
NextProtO60645 [Medical]
TSGene11336
GENETestsEXOC3
Huge Navigator EXOC3 [HugePedia]
snp3D : Map Gene to Disease11336
BioCentury BCIQEXOC3
ClinGenEXOC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11336
Chemical/Pharm GKB GenePA134869816
Clinical trialEXOC3
Miscellaneous
canSAR (ICR)EXOC3 (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEXOC3
EVEXEXOC3
GoPubMedEXOC3
iHOPEXOC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 9 19:17:38 CEST 2016

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