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EXOC3L1 (exocyst complex component 3 like 1)

Identity

Alias_namesEXOC3L
exocyst complex component 3-like
exocyst complex component 3-like 1
Alias_symbol (synonym)FLJ35539
FLJ35587
Other alias
HGNC (Hugo) EXOC3L1
LocusID (NCBI) 283849
Atlas_Id 62943
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67184379 and ends at 67190204 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TK2 (16q21) / EXOC3L1 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EXOC3L1   27540
Cards
Entrez_Gene (NCBI)EXOC3L1  283849  exocyst complex component 3 like 1
AliasesEXOC3L
GeneCards (Weizmann)EXOC3L1
Ensembl hg19 (Hinxton)ENSG00000179044 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179044 [Gene_View]  chr16:67184379-67190204 [Contig_View]  EXOC3L1 [Vega]
ICGC DataPortalENSG00000179044
TCGA cBioPortalEXOC3L1
AceView (NCBI)EXOC3L1
Genatlas (Paris)EXOC3L1
WikiGenes283849
SOURCE (Princeton)EXOC3L1
Genetics Home Reference (NIH)EXOC3L1
Genomic and cartography
GoldenPath hg38 (UCSC)EXOC3L1  -     chr16:67184379-67190204 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EXOC3L1  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblEXOC3L1 - 16q22.1 [CytoView hg19]  EXOC3L1 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIEXOC3L1 [Mapview hg19]  EXOC3L1 [Mapview hg38]
OMIM614117   
Gene and transcription
Genbank (Entrez)AI796350 AK092858 AK092906 AK292004 AK300915
RefSeq transcript (Entrez)NM_178516
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EXOC3L1
Cluster EST : UnigeneHs.647356 [ NCBI ]
CGAP (NCI)Hs.647356
Alternative Splicing GalleryENSG00000179044
Gene ExpressionEXOC3L1 [ NCBI-GEO ]   EXOC3L1 [ EBI - ARRAY_EXPRESS ]   EXOC3L1 [ SEEK ]   EXOC3L1 [ MEM ]
Gene Expression Viewer (FireBrowse)EXOC3L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283849
GTEX Portal (Tissue expression)EXOC3L1
Human Protein AtlasENSG00000179044-EXOC3L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VI1
Splice isoforms : SwissVarQ86VI1
PhosPhoSitePlusQ86VI1
Domains : Interpro (EBI)EXOC3/Sec6   
Domain families : Pfam (Sanger)Sec6 (PF06046)   
Domain families : Pfam (NCBI)pfam06046   
Conserved Domain (NCBI)EXOC3L1
DMDM Disease mutations283849
Blocks (Seattle)EXOC3L1
SuperfamilyQ86VI1
Human Protein Atlas [tissue]ENSG00000179044-EXOC3L1 [tissue]
Peptide AtlasQ86VI1
HPRD14148
IPIIPI00328904   IPI00300565   IPI01012288   
Protein Interaction databases
DIP (DOE-UCLA)Q86VI1
IntAct (EBI)Q86VI1
FunCoupENSG00000179044
BioGRIDEXOC3L1
STRING (EMBL)EXOC3L1
ZODIACEXOC3L1
Ontologies - Pathways
QuickGOQ86VI1
Ontology : AmiGOexocyst  exocyst  SNARE binding  molecular_function  exocytosis  exocytosis  peptide hormone secretion  transport vesicle  secretory granule  exocyst localization  
Ontology : EGO-EBIexocyst  exocyst  SNARE binding  molecular_function  exocytosis  exocytosis  peptide hormone secretion  transport vesicle  secretory granule  exocyst localization  
NDEx NetworkEXOC3L1
Atlas of Cancer Signalling NetworkEXOC3L1
Wikipedia pathwaysEXOC3L1
Orthology - Evolution
OrthoDB283849
GeneTree (enSembl)ENSG00000179044
Phylogenetic Trees/Animal Genes : TreeFamEXOC3L1
HOVERGENQ86VI1
HOGENOMQ86VI1
Homologs : HomoloGeneEXOC3L1
Homology/Alignments : Family Browser (UCSC)EXOC3L1
Gene fusions - Rearrangements
Tumor Fusion PortalEXOC3L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEXOC3L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EXOC3L1
dbVarEXOC3L1
ClinVarEXOC3L1
1000_GenomesEXOC3L1 
Exome Variant ServerEXOC3L1
ExAC (Exome Aggregation Consortium)ENSG00000179044
GNOMAD BrowserENSG00000179044
Genetic variants : HAPMAP283849
Genomic Variants (DGV)EXOC3L1 [DGVbeta]
DECIPHEREXOC3L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEXOC3L1 
Mutations
ICGC Data PortalEXOC3L1 
TCGA Data PortalEXOC3L1 
Broad Tumor PortalEXOC3L1
OASIS PortalEXOC3L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEXOC3L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEXOC3L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EXOC3L1
DgiDB (Drug Gene Interaction Database)EXOC3L1
DoCM (Curated mutations)EXOC3L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EXOC3L1 (select a term)
intoGenEXOC3L1
Cancer3DEXOC3L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614117   
Orphanet
DisGeNETEXOC3L1
MedgenEXOC3L1
Genetic Testing Registry EXOC3L1
NextProtQ86VI1 [Medical]
TSGene283849
GENETestsEXOC3L1
Target ValidationEXOC3L1
Huge Navigator EXOC3L1 [HugePedia]
snp3D : Map Gene to Disease283849
BioCentury BCIQEXOC3L1
ClinGenEXOC3L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283849
Chemical/Pharm GKB GenePA147031724
Clinical trialEXOC3L1
Miscellaneous
canSAR (ICR)EXOC3L1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEXOC3L1
EVEXEXOC3L1
GoPubMedEXOC3L1
iHOPEXOC3L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:33:12 CET 2017

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