Atlas of Genetics and Cytogenetics in Oncology and Haematology


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EXOC3L2 (exocyst complex component 3-like 2)

Identity

Alias_symbol (synonym)FLJ36147
XTP7
Other alias
HGNC (Hugo) EXOC3L2
LocusID (NCBI) 90332
Atlas_Id 45813
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 45715879 and ends at 45737469 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PLAUR (19q13.31) / EXOC3L2 (19q13.32)ZNF83 (19q13.41) / EXOC3L2 (19q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EXOC3L2   30162
Cards
Entrez_Gene (NCBI)EXOC3L2  90332  exocyst complex component 3-like 2
AliasesXTP7
GeneCards (Weizmann)EXOC3L2
Ensembl hg19 (Hinxton)ENSG00000130201 [Gene_View]  chr19:45715879-45737469 [Contig_View]  EXOC3L2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130201 [Gene_View]  chr19:45715879-45737469 [Contig_View]  EXOC3L2 [Vega]
ICGC DataPortalENSG00000130201
TCGA cBioPortalEXOC3L2
AceView (NCBI)EXOC3L2
Genatlas (Paris)EXOC3L2
WikiGenes90332
SOURCE (Princeton)EXOC3L2
Genetics Home Reference (NIH)EXOC3L2
Genomic and cartography
GoldenPath hg19 (UCSC)EXOC3L2  -     chr19:45715879-45737469 -  19q13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EXOC3L2  -     19q13.32   [Description]    (hg38-Dec_2013)
EnsemblEXOC3L2 - 19q13.32 [CytoView hg19]  EXOC3L2 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIEXOC3L2 [Mapview hg19]  EXOC3L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA069926 AF490256 AK093466 AK225791 BC104947
RefSeq transcript (Entrez)NM_138568
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)EXOC3L2
Cluster EST : UnigeneHs.337557 [ NCBI ]
CGAP (NCI)Hs.337557
Alternative Splicing GalleryENSG00000130201
Gene ExpressionEXOC3L2 [ NCBI-GEO ]   EXOC3L2 [ EBI - ARRAY_EXPRESS ]   EXOC3L2 [ SEEK ]   EXOC3L2 [ MEM ]
Gene Expression Viewer (FireBrowse)EXOC3L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90332
GTEX Portal (Tissue expression)EXOC3L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M3D2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M3D2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M3D2
Splice isoforms : SwissVarQ2M3D2
PhosPhoSitePlusQ2M3D2
Domains : Interpro (EBI)Sec6   
Domain families : Pfam (Sanger)Sec6 (PF06046)   
Domain families : Pfam (NCBI)pfam06046   
Conserved Domain (NCBI)EXOC3L2
DMDM Disease mutations90332
Blocks (Seattle)EXOC3L2
SuperfamilyQ2M3D2
Human Protein AtlasENSG00000130201
Peptide AtlasQ2M3D2
HPRD10311
IPIIPI00182839   
Protein Interaction databases
DIP (DOE-UCLA)Q2M3D2
IntAct (EBI)Q2M3D2
FunCoupENSG00000130201
BioGRIDEXOC3L2
STRING (EMBL)EXOC3L2
ZODIACEXOC3L2
Ontologies - Pathways
QuickGOQ2M3D2
Ontology : AmiGOexocyst  SNARE binding  molecular_function  cellular_component  exocytosis  biological_process  exocyst localization  
Ontology : EGO-EBIexocyst  SNARE binding  molecular_function  cellular_component  exocytosis  biological_process  exocyst localization  
NDEx NetworkEXOC3L2
Atlas of Cancer Signalling NetworkEXOC3L2
Wikipedia pathwaysEXOC3L2
Orthology - Evolution
OrthoDB90332
GeneTree (enSembl)ENSG00000130201
Phylogenetic Trees/Animal Genes : TreeFamEXOC3L2
HOVERGENQ2M3D2
HOGENOMQ2M3D2
Homologs : HomoloGeneEXOC3L2
Homology/Alignments : Family Browser (UCSC)EXOC3L2
Gene fusions - Rearrangements
Fusion : MitelmanPLAUR/EXOC3L2 [19q13.31/19q13.32]  [t(19;19)(q13;q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEXOC3L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EXOC3L2
dbVarEXOC3L2
ClinVarEXOC3L2
1000_GenomesEXOC3L2 
Exome Variant ServerEXOC3L2
ExAC (Exome Aggregation Consortium)EXOC3L2 (select the gene name)
Genetic variants : HAPMAP90332
Genomic Variants (DGV)EXOC3L2 [DGVbeta]
DECIPHER (Syndromes)19:45715879-45737469  ENSG00000130201
CONAN: Copy Number AnalysisEXOC3L2 
Mutations
ICGC Data PortalEXOC3L2 
TCGA Data PortalEXOC3L2 
Broad Tumor PortalEXOC3L2
OASIS PortalEXOC3L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEXOC3L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEXOC3L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EXOC3L2
DgiDB (Drug Gene Interaction Database)EXOC3L2
DoCM (Curated mutations)EXOC3L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EXOC3L2 (select a term)
intoGenEXOC3L2
Cancer3DEXOC3L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEXOC3L2
Genetic Testing Registry EXOC3L2
NextProtQ2M3D2 [Medical]
TSGene90332
GENETestsEXOC3L2
Huge Navigator EXOC3L2 [HugePedia]
snp3D : Map Gene to Disease90332
BioCentury BCIQEXOC3L2
ClinGenEXOC3L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90332
Chemical/Pharm GKB GenePA162385462
Clinical trialEXOC3L2
Miscellaneous
canSAR (ICR)EXOC3L2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEXOC3L2
EVEXEXOC3L2
GoPubMedEXOC3L2
iHOPEXOC3L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:00:29 CEST 2017

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