Atlas of Genetics and Cytogenetics in Oncology and Haematology


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EXOC4 (exocyst complex component 4)

Identity

Other namesSEC8
SEC8L1
Sec8p
HGNC (Hugo) EXOC4
LocusID (NCBI) 60412
Location 7q33
Location_base_pair Starts at 132937823 and ends at 133168946 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EXOC4   30389
Cards
Entrez_Gene (NCBI)EXOC4  60412  exocyst complex component 4
GeneCards (Weizmann)EXOC4
Ensembl (Hinxton)ENSG00000131558 [Gene_View]  chr7:132937823-133168946 [Contig_View]  EXOC4 [Vega]
ICGC DataPortalENSG00000131558
cBioPortalEXOC4
AceView (NCBI)EXOC4
Genatlas (Paris)EXOC4
WikiGenes60412
SOURCE (Princeton)NM_001037126 NM_021807
Genomic and cartography
GoldenPath (UCSC)EXOC4  -  7q33   chr7:132937823-133168946 +  7q33   [Description]    (hg19-Feb_2009)
EnsemblEXOC4 - 7q33 [CytoView]
Mapping of homologs : NCBIEXOC4 [Mapview]
OMIM608185   
Gene and transcription
Genbank (Entrez)AB051486 AF132734 AF380839 AK022751 AK027688
RefSeq transcript (Entrez)NM_001037126 NM_021807
RefSeq genomic (Entrez)AC_000139 NC_000007 NC_018918 NT_007933 NW_001839072 NW_004929332
Consensus coding sequences : CCDS (NCBI)EXOC4
Cluster EST : UnigeneHs.321273 [ NCBI ]
CGAP (NCI)Hs.321273
Alternative Splicing : Fast-db (Paris)GSHG0027740
Alternative Splicing GalleryENSG00000131558
Gene ExpressionEXOC4 [ NCBI-GEO ]     EXOC4 [ SEEK ]   EXOC4 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A65 (Uniprot)
NextProtQ96A65  [Medical]
With graphics : InterProQ96A65
Splice isoforms : SwissVarQ96A65 (Swissvar)
Domains : Interpro (EBI)Sec8_exocyst [organisation]  
Related proteins : CluSTrQ96A65
Domain families : Pfam (Sanger)Sec8_exocyst (PF04048)   
Domain families : Pfam (NCBI)pfam04048   
DMDM Disease mutations60412
Blocks (Seattle)Q96A65
Human Protein AtlasENSG00000131558 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ96A65
HPRD12185
IPIIPI00059279   IPI01010576   IPI01009759   IPI01015160   IPI01009278   IPI00655649   
Protein Interaction databases
DIP (DOE-UCLA)Q96A65
IntAct (EBI)Q96A65
FunCoupENSG00000131558
BioGRIDEXOC4
InParanoidQ96A65
Interologous Interaction database Q96A65
IntegromeDBEXOC4
STRING (EMBL)EXOC4
Ontologies - Pathways
Ontology : AmiGOexocyst  protein binding  cytoplasm  plasma membrane  vesicle docking involved in exocytosis  protein transport  membrane  PDZ domain binding  growth cone membrane  myelin sheath abaxonal region  cellular protein metabolic process  protein N-terminus binding  membrane organization  
Ontology : EGO-EBIexocyst  protein binding  cytoplasm  plasma membrane  vesicle docking involved in exocytosis  protein transport  membrane  PDZ domain binding  growth cone membrane  myelin sheath abaxonal region  cellular protein metabolic process  protein N-terminus binding  membrane organization  
Pathways : KEGGTight junction   
Protein Interaction DatabaseEXOC4
Wikipedia pathwaysEXOC4
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)EXOC4
snp3D : Map Gene to Disease60412
SNP (GeneSNP Utah)EXOC4
SNP : HGBaseEXOC4
Genetic variants : HAPMAPEXOC4
Exome VariantEXOC4
1000_GenomesEXOC4 
ICGC programENSG00000131558 
Somatic Mutations in Cancer : COSMICEXOC4 
CONAN: Copy Number AnalysisEXOC4 
Mutations and Diseases : HGMDEXOC4
Mutations and Diseases : intOGenEXOC4
Genomic VariantsEXOC4  EXOC4 [DGVbeta]
dbVarEXOC4
ClinVarEXOC4
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM608185   
MedgenEXOC4
GENETestsEXOC4
Disease Genetic AssociationEXOC4
Huge Navigator EXOC4 [HugePedia]  EXOC4 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneEXOC4
Homology/Alignments : Family Browser (UCSC)EXOC4
Phylogenetic Trees/Animal Genes : TreeFamEXOC4
Chemical/Protein Interactions : CTD60412
Chemical/Pharm GKB GenePA134944654
Clinical trialEXOC4
Cancer Resource (Charite)ENSG00000131558
Other databases
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
CoreMineEXOC4
iHOPEXOC4
OncoSearchEXOC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:46:10 CEST 2014

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